| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is gmuD [H]
Identifier: 157369081
GI number: 157369081
Start: 931630
End: 933015
Strand: Direct
Name: gmuD [H]
Synonym: Spro_0836
Alternate gene names: 157369081
Gene position: 931630-933015 (Clockwise)
Preceding gene: 157369080
Following gene: 157369082
Centisome position: 17.1
GC content: 52.45
Gene sequence:
>1386_bases ATGAAATATCAATTTGCTGACGATTTCTGGTGGGGAAGCGCCACCTCGGCACCCCAGTCGGAAGGGGCTGCCGCACGGGA TGGCAAAAGCCAGAACATCTTCGACTACTGGTATGAGATTGCACCAGAACGTTTTCATCATCAGGTCGGCCCGTCCGAGA CCTCCACGTTTTATGACAACTTCCAGCAAGATATCCTGCTGTTAAAAAACCTTGGGCATAATAGCTTCAGAACCTCTATC TCCTGGTCGCGGTTGATCCCGGATGGGGATGGCGAAGTGAATCCGAAAGCGGTGGCTTTCTATAATGCGCTGATCGACAG CCTACTGGCTCAGGGCATCACGCCATTTATCAATCTTTACCATTTCGATATGCCGCTGTGCATGCAGCAACAAGGTGGCT GGGAAAGCCGGACGGTGGTTGATGCCTACGCGCGTTATGCCAAAACCTGTTTCAGCCTGTTCGGCGACAGAGTCAGCCAT TGGTTCACCTTTAATGAGCCGATTGTCCCGGTCGAAGCCGGGTATCTGAACGACCTGCATTATCCTTGTGTCATTGATTT CAAAAGGGCAATTACAGTGGCTTACCACAGCGTGTTGGCCCATGCCAAAGCGGTGAGCGAGTTCAGGGCGCTGGGGAACC AGGGTTCTATCGGCATTATTTTGAACCTGAGTCCGACCTATCCTCGTTCGGACAGCCAGGAAGATGGCGTGGCGGCTCAC TATGCGGATCTGTTGCTGAATAAAAGCTTCCTCGATCCGGTGACCAAAGGGCGTTATCCGGACGATTTGGTGAATTTACT GCGGGCCAATGATTTGTTGCCGCAGACAGCAGCGGAAGACGCGCAGCTGATTGCCGATGGGGTGGTGGATATTCTGGGCG TCAATTACTACCAACCGCGCAGGGTCAAAGCAAAAGAAGGTTATCAGGCCAGCGACCCGGTAACCATGCCGGAAGACCTG TTCAGCTATTACGCCATGCCGGGCCGCAAGATTAACCCGCACCGCGGCTGGGAAATCTATGAAAAAGGCCTGTATGACAT CCTGATGGATCTGAAGGAAAACTACGGCAACATTCCCTGCTATATTTCAGAAAACGGTATGGGTGTGGAGGGCGAAGAGG CCTTCATCGGTGCCAGTGGGCGGGTAGAGGACGATTATCGAATCGACTTTATTCGTGACCATCTGAAATGGTTGCATCAG GCGTTGTCCGAGGGCTCCAACTGTAAGGGCTACCATCTATGGACCTTTATTGACTGCTGGTCCTGGCTCAATGCCTACAA GAATCGCTACGGGTTAGTCCGGCTGGAGCGGGATAGCCAGCAACGTACGATTAAAAAGAGCGGCTATTGGTTTGCCGAGA CGGCCAGGCAAAACGGTTTTGATTAA
Upstream 100 bases:
>100_bases TGATCAGGCAACGGAAAGCGAAGAAGACATCGCCAAAGCGTTGAAATTCTAACTGCAGTCTGGGGCAGCGCTTGCTGCCC CGGTTTTAGAGGGGCTTCTG
Downstream 100 bases:
>100_bases TGGGAGCGCGCGCGGTGTCTGACAACCTGGTTTCGCTGAATACCAACGACGTTAAGCTGATTCGGGAGCAGGATTTTTTT AACTGCAAAGATTTCCATCT
Product: beta-glucosidase
Products: NA
Alternate protein names: Aryl-phospho-beta-D-glucosidase BglD; Glucomannan utilization protein D [H]
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MKYQFADDFWWGSATSAPQSEGAAARDGKSQNIFDYWYEIAPERFHHQVGPSETSTFYDNFQQDILLLKNLGHNSFRTSI SWSRLIPDGDGEVNPKAVAFYNALIDSLLAQGITPFINLYHFDMPLCMQQQGGWESRTVVDAYARYAKTCFSLFGDRVSH WFTFNEPIVPVEAGYLNDLHYPCVIDFKRAITVAYHSVLAHAKAVSEFRALGNQGSIGIILNLSPTYPRSDSQEDGVAAH YADLLLNKSFLDPVTKGRYPDDLVNLLRANDLLPQTAAEDAQLIADGVVDILGVNYYQPRRVKAKEGYQASDPVTMPEDL FSYYAMPGRKINPHRGWEIYEKGLYDILMDLKENYGNIPCYISENGMGVEGEEAFIGASGRVEDDYRIDFIRDHLKWLHQ ALSEGSNCKGYHLWTFIDCWSWLNAYKNRYGLVRLERDSQQRTIKKSGYWFAETARQNGFD
Sequences:
>Translated_461_residues MKYQFADDFWWGSATSAPQSEGAAARDGKSQNIFDYWYEIAPERFHHQVGPSETSTFYDNFQQDILLLKNLGHNSFRTSI SWSRLIPDGDGEVNPKAVAFYNALIDSLLAQGITPFINLYHFDMPLCMQQQGGWESRTVVDAYARYAKTCFSLFGDRVSH WFTFNEPIVPVEAGYLNDLHYPCVIDFKRAITVAYHSVLAHAKAVSEFRALGNQGSIGIILNLSPTYPRSDSQEDGVAAH YADLLLNKSFLDPVTKGRYPDDLVNLLRANDLLPQTAAEDAQLIADGVVDILGVNYYQPRRVKAKEGYQASDPVTMPEDL FSYYAMPGRKINPHRGWEIYEKGLYDILMDLKENYGNIPCYISENGMGVEGEEAFIGASGRVEDDYRIDFIRDHLKWLHQ ALSEGSNCKGYHLWTFIDCWSWLNAYKNRYGLVRLERDSQQRTIKKSGYWFAETARQNGFD >Mature_461_residues MKYQFADDFWWGSATSAPQSEGAAARDGKSQNIFDYWYEIAPERFHHQVGPSETSTFYDNFQQDILLLKNLGHNSFRTSI SWSRLIPDGDGEVNPKAVAFYNALIDSLLAQGITPFINLYHFDMPLCMQQQGGWESRTVVDAYARYAKTCFSLFGDRVSH WFTFNEPIVPVEAGYLNDLHYPCVIDFKRAITVAYHSVLAHAKAVSEFRALGNQGSIGIILNLSPTYPRSDSQEDGVAAH YADLLLNKSFLDPVTKGRYPDDLVNLLRANDLLPQTAAEDAQLIADGVVDILGVNYYQPRRVKAKEGYQASDPVTMPEDL FSYYAMPGRKINPHRGWEIYEKGLYDILMDLKENYGNIPCYISENGMGVEGEEAFIGASGRVEDDYRIDFIRDHLKWLHQ ALSEGSNCKGYHLWTFIDCWSWLNAYKNRYGLVRLERDSQQRTIKKSGYWFAETARQNGFD
Specific function: Phospho-beta-D-glucosidase that seems to be involved in the degradation of glucomannan. Is also capable of hydrolyzing aryl-phospho-beta-D-glucosides, although very weakly, and plays only a minor role, if any, in the degradation of these substrates in viv
COG id: COG2723
COG function: function code G; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 1 family [H]
Homologues:
Organism=Homo sapiens, GI13273313, Length=481, Percent_Identity=29.1060291060291, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI32481206, Length=487, Percent_Identity=31.6221765913758, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI110681710, Length=480, Percent_Identity=29.1666666666667, Blast_Score=191, Evalue=2e-48, Organism=Homo sapiens, GI28376633, Length=469, Percent_Identity=27.9317697228145, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI24497614, Length=484, Percent_Identity=26.0330578512397, Blast_Score=120, Evalue=2e-27, Organism=Escherichia coli, GI2367174, Length=490, Percent_Identity=30.6122448979592, Blast_Score=206, Evalue=3e-54, Organism=Escherichia coli, GI1789070, Length=489, Percent_Identity=30.879345603272, Blast_Score=196, Evalue=3e-51, Organism=Escherichia coli, GI2367270, Length=474, Percent_Identity=29.3248945147679, Blast_Score=187, Evalue=9e-49, Organism=Caenorhabditis elegans, GI17552856, Length=480, Percent_Identity=31.0416666666667, Blast_Score=201, Evalue=6e-52, Organism=Caenorhabditis elegans, GI17539390, Length=481, Percent_Identity=31.1850311850312, Blast_Score=196, Evalue=2e-50, Organism=Drosophila melanogaster, GI21356577, Length=483, Percent_Identity=28.7784679089027, Blast_Score=191, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001360 - InterPro: IPR018120 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00232 Glyco_hydro_1 [H]
EC number: =3.2.1.86 [H]
Molecular weight: Translated: 52570; Mature: 52570
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS00572 GLYCOSYL_HYDROL_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYQFADDFWWGSATSAPQSEGAAARDGKSQNIFDYWYEIAPERFHHQVGPSETSTFYDN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCCHHHHHHHH FQQDILLLKNLGHNSFRTSISWSRLIPDGDGEVNPKAVAFYNALIDSLLAQGITPFINLY HHHHHHHHHHCCCCHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH HFDMPLCMQQQGGWESRTVVDAYARYAKTCFSLFGDRVSHWFTFNEPIVPVEAGYLNDLH HCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEECCCCCCCCC YPCVIDFKRAITVAYHSVLAHAKAVSEFRALGNQGSIGIILNLSPTYPRSDSQEDGVAAH CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHH YADLLLNKSFLDPVTKGRYPDDLVNLLRANDLLPQTAAEDAQLIADGVVDILGVNYYQPR HHHHHHHHHHHCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC RVKAKEGYQASDPVTMPEDLFSYYAMPGRKINPHRGWEIYEKGLYDILMDLKENYGNIPC CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCE YISENGMGVEGEEAFIGASGRVEDDYRIDFIRDHLKWLHQALSEGSNCKGYHLWTFIDCW EECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHH SWLNAYKNRYGLVRLERDSQQRTIKKSGYWFAETARQNGFD HHHHHHHCCCCEEEECCCCHHHHHHHCCCEEEEHHHCCCCC >Mature Secondary Structure MKYQFADDFWWGSATSAPQSEGAAARDGKSQNIFDYWYEIAPERFHHQVGPSETSTFYDN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCCHHHHHHHH FQQDILLLKNLGHNSFRTSISWSRLIPDGDGEVNPKAVAFYNALIDSLLAQGITPFINLY HHHHHHHHHHCCCCHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH HFDMPLCMQQQGGWESRTVVDAYARYAKTCFSLFGDRVSHWFTFNEPIVPVEAGYLNDLH HCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEECCCCCCCCC YPCVIDFKRAITVAYHSVLAHAKAVSEFRALGNQGSIGIILNLSPTYPRSDSQEDGVAAH CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHH YADLLLNKSFLDPVTKGRYPDDLVNLLRANDLLPQTAAEDAQLIADGVVDILGVNYYQPR HHHHHHHHHHHCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC RVKAKEGYQASDPVTMPEDLFSYYAMPGRKINPHRGWEIYEKGLYDILMDLKENYGNIPC CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCE YISENGMGVEGEEAFIGASGRVEDDYRIDFIRDHLKWLHQALSEGSNCKGYHLWTFIDCW EECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHH SWLNAYKNRYGLVRLERDSQQRTIKKSGYWFAETARQNGFD HHHHHHHCCCCEEEECCCCHHHHHHHCCCEEEEHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]