Click here to switch to the map view.

The map label for this gene is ygeK [C]

Identifier: 157368857

GI number: 157368857

Start: 678483

End: 679241

Strand: Direct

Name: ygeK [C]

Synonym: Spro_0612

Alternate gene names: 157368857

Gene position: 678483-679241 (Clockwise)

Preceding gene: 157368855

Following gene: 157368858

Centisome position: 12.45

GC content: 58.76

Gene sequence:

>759_bases
ATGAATATTCAGGTCGAAAGATTATCAGCAGTGATCGATGCGGTAGCGACCCCGCGCTTCTATCCCAGCCTGCTGGCCTG
GCTGGAAGGTTTCTTCGCCTTTGATAACGCCATTGTTTACGCCTTCGAACGCGGCCAGGCACCACGCTGTCTGATCAAAA
CCGAGAAAGAAAACAGTGACGCGGTCAATCAACTCTACCAGCAGGGCGCTTACCTGCAGGATCCGTTTTATCAGGCGCTG
AACGGCGGGGGATGCGGCGAGGTATTGACCCTGCGCCAACTGGCGCCCTGTGGTTTTTATCATACGGATTATTACCGTAA
TTTTTATCGCAAGACCGGCTGGCATGACGAAGCCGGTGTGCTGCTGCCGCTGACGGCGGAGCGCGGGTTGGGGGTGTTTT
TTGGTTCGGCGCGCCAGTCGGTGGGAGTACGTTCCCCGCAGCTGGCGGACCTGCGTGATGCATTGACGCTGTTGAAAAGC
GTCGCTCGCCTGCATGGCGAAGTGCGGGTTGCGCCTGCCACGCCAGATCGGGTAACGGACAGTGCCGTACAGGCACGCTA
TCTGCTGACGCCACGCGAGCGCGAGATTGTGGATCTGATCCTCGACGGCTGCGGCTCGCAGCAGATCGCCGACCGGCTGT
TTATCAGCCTGGGCACGGTAAAAAACCACCGCAAAAACATCTACAGCAAGCTGGATATTGGTTCGCAGGCCGAACTGTTC
AGCCTGCTGCTGGCCACGCCGCTGCGTCGCAGCGCCTGA

Upstream 100 bases:

>100_bases
GCGGTTGCATTTGGCGCTATTGAGTGTTTTCTATAACAAGCAGGCCACGGCGCAGCCGAAATAAAGTGATTGTTAATTTA
TTAATGATGGCGAGGCGAAG

Downstream 100 bases:

>100_bases
GTGTTAATTATTTGTTGCGAATGTCCCTAAGGGGACATGGTGGCCGCCCGGCCGCTTGCCGATAATCCGATGACAGAGCA
GGGCATCGGGAGTGCGGCAG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNIQVERLSAVIDAVATPRFYPSLLAWLEGFFAFDNAIVYAFERGQAPRCLIKTEKENSDAVNQLYQQGAYLQDPFYQAL
NGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTAERGLGVFFGSARQSVGVRSPQLADLRDALTLLKS
VARLHGEVRVAPATPDRVTDSAVQARYLLTPREREIVDLILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAELF
SLLLATPLRRSA

Sequences:

>Translated_252_residues
MNIQVERLSAVIDAVATPRFYPSLLAWLEGFFAFDNAIVYAFERGQAPRCLIKTEKENSDAVNQLYQQGAYLQDPFYQAL
NGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTAERGLGVFFGSARQSVGVRSPQLADLRDALTLLKS
VARLHGEVRVAPATPDRVTDSAVQARYLLTPREREIVDLILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAELF
SLLLATPLRRSA
>Mature_252_residues
MNIQVERLSAVIDAVATPRFYPSLLAWLEGFFAFDNAIVYAFERGQAPRCLIKTEKENSDAVNQLYQQGAYLQDPFYQAL
NGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGVLLPLTAERGLGVFFGSARQSVGVRSPQLADLRDALTLLKS
VARLHGEVRVAPATPDRVTDSAVQARYLLTPREREIVDLILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAELF
SLLLATPLRRSA

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28072; Mature: 28072

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQVERLSAVIDAVATPRFYPSLLAWLEGFFAFDNAIVYAFERGQAPRCLIKTEKENSD
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCHH
AVNQLYQQGAYLQDPFYQALNGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGV
HHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCE
LLPLTAERGLGVFFGSARQSVGVRSPQLADLRDALTLLKSVARLHGEVRVAPATPDRVTD
EEEEECCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
SAVQARYLLTPREREIVDLILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAELF
HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SLLLATPLRRSA
HHHHHHHHHCCC
>Mature Secondary Structure
MNIQVERLSAVIDAVATPRFYPSLLAWLEGFFAFDNAIVYAFERGQAPRCLIKTEKENSD
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCHH
AVNQLYQQGAYLQDPFYQALNGGGCGEVLTLRQLAPCGFYHTDYYRNFYRKTGWHDEAGV
HHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCE
LLPLTAERGLGVFFGSARQSVGVRSPQLADLRDALTLLKSVARLHGEVRVAPATPDRVTD
EEEEECCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
SAVQARYLLTPREREIVDLILDGCGSQQIADRLFISLGTVKNHRKNIYSKLDIGSQAELF
HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SLLLATPLRRSA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7789814 [H]