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The map label for this gene is ybiS [H]

Identifier: 157368843

GI number: 157368843

Start: 662589

End: 663509

Strand: Direct

Name: ybiS [H]

Synonym: Spro_0598

Alternate gene names: 157368843

Gene position: 662589-663509 (Clockwise)

Preceding gene: 157368842

Following gene: 157368844

Centisome position: 12.16

GC content: 57.33

Gene sequence:

>921_bases
ATGAAAATGAGCATTCGCGCGTTACTAACCCTGTTTACGGCACTGGTGGTATTCAGCCAAGCTGCCTTCGCCGTTGTCTA
TCCATTACCTGCCAAAGACAGCCGTCTGGTAGGTGAGAACATCCAAATCACCGTACCGGAAGACAGCAAGCTGCCGCTGG
AGAGCTTTGCCGCTCAATACCAGATGGGCCTGAGCAATATGCTGGAAGCCAACCCGGGTGTGGATCCGTTCCTGCCGAAG
GCCGGCAGCACCCTGACCATCCCTCAGCAGCTGATCCTGCCTGACGCTCCGCGTGAAGGCATCATCATCAACAGCGCCGA
GATGCGTCTGTACTACTACCCGAAAGGCACCAACACGGTGATCGTGCTGCCAATCGGTATCGGCCAGTTGGGTAAAGATA
CCCCTCTGAACTGGACCACCACGGTACAGCGCAAGAAAGACGGCCCAACCTGGACGCCAACCGCCAAGATGCGCGCAGAA
TACGCCGCTGACGGCGAGATCCTGCCAGCGGTATTCCCGGCCGGTCCTGACAACCCGATGGGGCTGTATGCGTTGTACGT
TGGTCGTCTGTATGCGATCCACGGTACCAACGCCAACTTCGGTATCGGTCTGCGCGTGAGCCACGGCTGCGTGCGTCTGC
GTGCTGACGACATCAAGTTCCTGTTCGATAACGTGCCGGTCGGGACTCGTGTGCAATTTATCAACGAGCCGATCAAAGTC
AGCGTAGAGCCGGACGGTTCCCGTTACCTGGAAGTGCACAACCCGCTTTCCGCTAACGAAGAGCAGCTGAAATCGAAAGA
CCCGGTGCCGTTGACCATCTCTGCGCCAGTAGGCAAAGTGATGATGGACCCAGCCGTTAACCAGAGCGAAGTGGACGCGG
CAATGAAAGCCCGTTCCGGTATGCCGGTTAAAGTGAACTGA

Upstream 100 bases:

>100_bases
GTAATGTTTCACACTTAGGTCGATGTGCACATATAATGCGCATCCGGTCTTTCATGGCCGAAATAACCTATAACTGCCAG
TGGCCATAACCTACACGAAG

Downstream 100 bases:

>100_bases
TTAAATCAGTGCTGCAAACAAGACGCCTGCGGGCGTCTTTTTTTATGGTGGTTATTTTAAATAAAAATATTTATCTCTCA
AAAAAGTGAATTATCGTCCT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKMSIRALLTLFTALVVFSQAAFAVVYPLPAKDSRLVGENIQITVPEDSKLPLESFAAQYQMGLSNMLEANPGVDPFLPK
AGSTLTIPQQLILPDAPREGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTTVQRKKDGPTWTPTAKMRAE
YAADGEILPAVFPAGPDNPMGLYALYVGRLYAIHGTNANFGIGLRVSHGCVRLRADDIKFLFDNVPVGTRVQFINEPIKV
SVEPDGSRYLEVHNPLSANEEQLKSKDPVPLTISAPVGKVMMDPAVNQSEVDAAMKARSGMPVKVN

Sequences:

>Translated_306_residues
MKMSIRALLTLFTALVVFSQAAFAVVYPLPAKDSRLVGENIQITVPEDSKLPLESFAAQYQMGLSNMLEANPGVDPFLPK
AGSTLTIPQQLILPDAPREGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTTVQRKKDGPTWTPTAKMRAE
YAADGEILPAVFPAGPDNPMGLYALYVGRLYAIHGTNANFGIGLRVSHGCVRLRADDIKFLFDNVPVGTRVQFINEPIKV
SVEPDGSRYLEVHNPLSANEEQLKSKDPVPLTISAPVGKVMMDPAVNQSEVDAAMKARSGMPVKVN
>Mature_306_residues
MKMSIRALLTLFTALVVFSQAAFAVVYPLPAKDSRLVGENIQITVPEDSKLPLESFAAQYQMGLSNMLEANPGVDPFLPK
AGSTLTIPQQLILPDAPREGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTTVQRKKDGPTWTPTAKMRAE
YAADGEILPAVFPAGPDNPMGLYALYVGRLYAIHGTNANFGIGLRVSHGCVRLRADDIKFLFDNVPVGTRVQFINEPIKV
SVEPDGSRYLEVHNPLSANEEQLKSKDPVPLTISAPVGKVMMDPAVNQSEVDAAMKARSGMPVKVN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=306, Percent_Identity=70.9150326797386, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1788299, Length=293, Percent_Identity=63.1399317406143, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI1787356, Length=286, Percent_Identity=55.2447552447552, Blast_Score=288, Evalue=5e-79,
Organism=Escherichia coli, GI1787968, Length=306, Percent_Identity=50.6535947712418, Blast_Score=263, Evalue=9e-72,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33260; Mature: 33260

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMSIRALLTLFTALVVFSQAAFAVVYPLPAKDSRLVGENIQITVPEDSKLPLESFAAQY
CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCEEEEECCCCCCCHHHHHHHH
QMGLSNMLEANPGVDPFLPKAGSTLTIPQQLILPDAPREGIIINSAEMRLYYYPKGTNTV
HHHHHHHHHCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCEEEECCEEEEEEEECCCCEE
IVLPIGIGQLGKDTPLNWTTTVQRKKDGPTWTPTAKMRAEYAADGEILPAVFPAGPDNPM
EEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCC
GLYALYVGRLYAIHGTNANFGIGLRVSHGCVRLRADDIKFLFDNVPVGTRVQFINEPIKV
HHHEEEEEEEEEEECCCCCEEEEEEEECCEEEEEECCEEEEECCCCCCCEEEEECCCEEE
SVEPDGSRYLEVHNPLSANEEQLKSKDPVPLTISAPVGKVMMDPAVNQSEVDAAMKARSG
EECCCCCEEEEECCCCCCCHHHHHCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHCCC
MPVKVN
CCEEEC
>Mature Secondary Structure
MKMSIRALLTLFTALVVFSQAAFAVVYPLPAKDSRLVGENIQITVPEDSKLPLESFAAQY
CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCEEEEECCCCCCCHHHHHHHH
QMGLSNMLEANPGVDPFLPKAGSTLTIPQQLILPDAPREGIIINSAEMRLYYYPKGTNTV
HHHHHHHHHCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCEEEECCEEEEEEEECCCCEE
IVLPIGIGQLGKDTPLNWTTTVQRKKDGPTWTPTAKMRAEYAADGEILPAVFPAGPDNPM
EEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCC
GLYALYVGRLYAIHGTNANFGIGLRVSHGCVRLRADDIKFLFDNVPVGTRVQFINEPIKV
HHHEEEEEEEEEEECCCCCEEEEEEEECCEEEEEECCEEEEECCCCCCCEEEEECCCEEE
SVEPDGSRYLEVHNPLSANEEQLKSKDPVPLTISAPVGKVMMDPAVNQSEVDAAMKARSG
EECCCCCEEEEECCCCCCCHHHHHCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHCCC
MPVKVN
CCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]