Click here to switch to the map view.

The map label for this gene is ygeR [H]

Identifier: 157368548

GI number: 157368548

Start: 354129

End: 354878

Strand: Reverse

Name: ygeR [H]

Synonym: Spro_0299

Alternate gene names: 157368548

Gene position: 354878-354129 (Counterclockwise)

Preceding gene: 157368562

Following gene: 157368546

Centisome position: 6.51

GC content: 54.67

Gene sequence:

>750_bases
ATGGGAAGCACATTCGCTGTATGGCGGCTGATTGCCGTGTGCGTAATCAGTCTGGGATTACTGGGGTGCGGCTCCGGAAA
GAAATCGAACAGCTACGACCGTGATTATGATCGCTTGGCCAGAGGCAGCTATAACGGCAACACCTATACCGTCAAACGTG
GCGATACGCTGTTCTACATTGCCTGGATCACCAACAGCGAAGTCAGCGAGTTGGCGCGACGCAATAAAATCCCCAAACCC
TACAACCTCGAGATTGGCCAAAAGCTGGCGTTAAATAACGCGACGGCAAAGAAAGGCAAGACACGCAAAACACAGTCAAC
CAGCCAAATTGCAGCCGTTGCACCGCCGATCCGCAGCAGTATCAAATGCTGGCGCTGGCCAACCCAGGGCAACATTATCA
GCAAGTATTCGACGGCCGACGGGGGCAATAAAGGCATCGATATCGCCGGTAACCGTGGGCAACCGGTATTTGCCGCAGCC
AAAGGGCGGGTGGTGTACGTTGGCAACCAACTGCGGGGTTATGGCAATCTGATTATGATCAAACACAATGATGAGTACAT
CAGCGCCTATGCCCACAACAACACTCTGCTGGTGCGCAATGCTCAGGAAGTAAAAGCCGGGCAGAAGATTGCCACCATGG
GCAGCACAGGTACCGACAAGGTGATGCTGCACTTCCAGATCCGTTATCGTGCTACCGCATTGGATCCGCTGCGCTTCCTG
CCAGCCCAGGGCTCTGCCCCCTCCTGCTGA

Upstream 100 bases:

>100_bases
AAAATTTAGTCCACGGGGGCGTTTTTGACCACCTGACCGTTGATGTTACTATAGGCAGATCACAATAGAGCGCGACGACG
TTTAAGGACGATATTTGAGT

Downstream 100 bases:

>100_bases
TCCCAAGACGACTAAACCCGCCATCAGGCGGGTTTAGTCGTCAAATCAATCTCGTCCAAAAACGGTTAAGAGTCTGTTAT
CTGCCTGGCTTTGCCGGACA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MGSTFAVWRLIAVCVISLGLLGCGSGKKSNSYDRDYDRLARGSYNGNTYTVKRGDTLFYIAWITNSEVSELARRNKIPKP
YNLEIGQKLALNNATAKKGKTRKTQSTSQIAAVAPPIRSSIKCWRWPTQGNIISKYSTADGGNKGIDIAGNRGQPVFAAA
KGRVVYVGNQLRGYGNLIMIKHNDEYISAYAHNNTLLVRNAQEVKAGQKIATMGSTGTDKVMLHFQIRYRATALDPLRFL
PAQGSAPSC

Sequences:

>Translated_249_residues
MGSTFAVWRLIAVCVISLGLLGCGSGKKSNSYDRDYDRLARGSYNGNTYTVKRGDTLFYIAWITNSEVSELARRNKIPKP
YNLEIGQKLALNNATAKKGKTRKTQSTSQIAAVAPPIRSSIKCWRWPTQGNIISKYSTADGGNKGIDIAGNRGQPVFAAA
KGRVVYVGNQLRGYGNLIMIKHNDEYISAYAHNNTLLVRNAQEVKAGQKIATMGSTGTDKVMLHFQIRYRATALDPLRFL
PAQGSAPSC
>Mature_248_residues
GSTFAVWRLIAVCVISLGLLGCGSGKKSNSYDRDYDRLARGSYNGNTYTVKRGDTLFYIAWITNSEVSELARRNKIPKPY
NLEIGQKLALNNATAKKGKTRKTQSTSQIAAVAPPIRSSIKCWRWPTQGNIISKYSTADGGNKGIDIAGNRGQPVFAAAK
GRVVYVGNQLRGYGNLIMIKHNDEYISAYAHNNTLLVRNAQEVKAGQKIATMGSTGTDKVMLHFQIRYRATALDPLRFLP
AQGSAPSC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=252, Percent_Identity=56.7460317460317, Blast_Score=271, Evalue=3e-74,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=67.7966101694915, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI87082297, Length=115, Percent_Identity=34.7826086956522, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27238; Mature: 27107

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSTFAVWRLIAVCVISLGLLGCGSGKKSNSYDRDYDRLARGSYNGNTYTVKRGDTLFYI
CCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEE
AWITNSEVSELARRNKIPKPYNLEIGQKLALNNATAKKGKTRKTQSTSQIAAVAPPIRSS
EEECCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHC
IKCWRWPTQGNIISKYSTADGGNKGIDIAGNRGQPVFAAAKGRVVYVGNQLRGYGNLIMI
CEEEECCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCCEEEECCCCCCCCCEEEE
KHNDEYISAYAHNNTLLVRNAQEVKAGQKIATMGSTGTDKVMLHFQIRYRATALDPLRFL
EECCCEEEEEECCCEEEEECHHHHHCCCEEEECCCCCCCEEEEEEEEEEEEEEECCHHCC
PAQGSAPSC
CCCCCCCCC
>Mature Secondary Structure 
GSTFAVWRLIAVCVISLGLLGCGSGKKSNSYDRDYDRLARGSYNGNTYTVKRGDTLFYI
CCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEE
AWITNSEVSELARRNKIPKPYNLEIGQKLALNNATAKKGKTRKTQSTSQIAAVAPPIRSS
EEECCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHC
IKCWRWPTQGNIISKYSTADGGNKGIDIAGNRGQPVFAAAKGRVVYVGNQLRGYGNLIMI
CEEEECCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCCEEEECCCCCCCCCEEEE
KHNDEYISAYAHNNTLLVRNAQEVKAGQKIATMGSTGTDKVMLHFQIRYRATALDPLRFL
EECCCEEEEEECCCEEEEECHHHHHCCCEEEECCCCCCCEEEEEEEEEEEEEEECCHHCC
PAQGSAPSC
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]