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The map label for this gene is rsd [H]

Identifier: 157368534

GI number: 157368534

Start: 327912

End: 328415

Strand: Reverse

Name: rsd [H]

Synonym: Spro_0285

Alternate gene names: 157368534

Gene position: 328415-327912 (Counterclockwise)

Preceding gene: 157368541

Following gene: 157368533

Centisome position: 6.03

GC content: 50.4

Gene sequence:

>504_bases
ATGCTCAACCGTTTGGAAAGCCTGACTCAGCGCGTTGGTGGTAGTAATGAATTAGTAGATCAATGGCTTCAGGCACGCAA
GCAGTTGCTGGTCGCCTATTGTGCCCTGGTGGGCATTAAACCTAACAAAGAAAAGCATACGCCGCTGAATGAAAAAGCGC
TGGAGAACTTTTGCCATAATCTGGTGGATTATCTCTCCGCCGGCCATTTTCATATCTATGACAGAATAATCAAGCAAGTG
GAAGGCGCATCCAGTCCGAAAATGTCTCTGGCGGTCAACATCTATCCCAAGCTGTGGGCCAATACCGAGCAGATCATGGC
TTTCCACGATCGCTATACCGAAGTGGATATCGATCAGGACCTGTGTCTGGAATTACATCAGGCGTTATCCGATATCGGTG
AAACGCTGGCGGCTCGTTTTACCCTTGAAGACAGGCTGATCCAACTGGCGGCTGAAACCTGGCAGCAGGCTGAGCCGGAC
AAAACGCTGGATCCAGCCGGCTAA

Upstream 100 bases:

>100_bases
TATCGTTGTTGCACAACCTCAGCTTCACTGGCACTCTACAAATCGGCCTTGTTACATTTTAATAACTTACTGTTACGTTT
TATTACTTACGGAGTCAAAC

Downstream 100 bases:

>100_bases
AATTTTGTAGTCTTTTTTATTATCCCTCCTATACTGGAGGGCATCTTGTCGGAGTGCCTAGCGCCTGATTTGTTCATCAA
ATTGGCCAGGCTGAGACCGT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLNRLESLTQRVGGSNELVDQWLQARKQLLVAYCALVGIKPNKEKHTPLNEKALENFCHNLVDYLSAGHFHIYDRIIKQV
EGASSPKMSLAVNIYPKLWANTEQIMAFHDRYTEVDIDQDLCLELHQALSDIGETLAARFTLEDRLIQLAAETWQQAEPD
KTLDPAG

Sequences:

>Translated_167_residues
MLNRLESLTQRVGGSNELVDQWLQARKQLLVAYCALVGIKPNKEKHTPLNEKALENFCHNLVDYLSAGHFHIYDRIIKQV
EGASSPKMSLAVNIYPKLWANTEQIMAFHDRYTEVDIDQDLCLELHQALSDIGETLAARFTLEDRLIQLAAETWQQAEPD
KTLDPAG
>Mature_167_residues
MLNRLESLTQRVGGSNELVDQWLQARKQLLVAYCALVGIKPNKEKHTPLNEKALENFCHNLVDYLSAGHFHIYDRIIKQV
EGASSPKMSLAVNIYPKLWANTEQIMAFHDRYTEVDIDQDLCLELHQALSDIGETLAARFTLEDRLIQLAAETWQQAEPD
KTLDPAG

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=159, Percent_Identity=56.6037735849057, Blast_Score=178, Evalue=2e-46,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18973; Mature: 18973

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRLESLTQRVGGSNELVDQWLQARKQLLVAYCALVGIKPNKEKHTPLNEKALENFCHN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSAGHFHIYDRIIKQVEGASSPKMSLAVNIYPKLWANTEQIMAFHDRYTEVDIDQD
HHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHCCHHHHHHHHHHHCCCCCCHH
LCLELHQALSDIGETLAARFTLEDRLIQLAAETWQQAEPDKTLDPAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLNRLESLTQRVGGSNELVDQWLQARKQLLVAYCALVGIKPNKEKHTPLNEKALENFCHN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSAGHFHIYDRIIKQVEGASSPKMSLAVNIYPKLWANTEQIMAFHDRYTEVDIDQD
HHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHCCHHHHHHHHHHHCCCCCCHH
LCLELHQALSDIGETLAARFTLEDRLIQLAAETWQQAEPDKTLDPAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA