| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is dppD [H]
Identifier: 157368390
GI number: 157368390
Start: 152163
End: 153143
Strand: Direct
Name: dppD [H]
Synonym: Spro_0141
Alternate gene names: 157368390
Gene position: 152163-153143 (Clockwise)
Preceding gene: 157368389
Following gene: 157368391
Centisome position: 2.79
GC content: 59.33
Gene sequence:
>981_bases ATGGCGTTATTAAATGTAGACAAGCTTTCGGTGCACTTCGGTGACGAAGGCACCCCTTTCCGCGCGGTAGACCGTATCAG TTACAGCGTGGAGCAGGGCCAGGTAGTGGGGATCGTCGGTGAATCCGGCTCCGGCAAATCCGTCAGCTCGCTGGCGATTA TGGGGCTGATCGATTTCCCCGGTAAGGTAATGGCCGAAAAGCTGGAGTTTAACGGCCAGGATCTGCGTAAAATTTCCGAA AAAGAGCGCCGCCAACTGGTGGGCTCGGAAGTGGCGATGATCTTCCAGGATCCGATGACCAGTCTGAACCCATGCTACAC CGTCGGTTTCCAGATTATGGAAGCGCTGAAGGTGCATCAGGGCGGCAACCGTCGCACCCGTCGTCAGCGGGCTATCGATC TGCTGACGCAGGTGGGCATTCCCGATCCGGCCTCGCGGCTGGACGTGTATCCGCACCAGCTTTCCGGTGGTATGAGCCAG CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCGAAGCTGCTGATTGCCGATGAACCGACCACCGCACTCGACGTGAC CATCCAGGCGCAAATTATCGAGCTGCTGCTGGAGTTGCAGCAGCGGGAAAATATGGCGCTGCTGCTGATTACCCACGATT TGGCGCTGGTGTCCGAGGCGGCGCATCACATCATCGTGATGTATGCCGGTCAGGTGGTGGAATCCGGTAAAGCATCGGAA ATCTTCCGCGCACCGCGGCATCCTTATACTCAGGCGCTATTGCGCGCGCTGCCGGAGTTCGCGGTTGACAAGGCGCGCCT GGCTTCGCTGCCGGGCGTGGTACCGGGCAAATATGACCGCCCAAGCGGTTGTTTGCTCAACCCGCGTTGCCCGTACGCCA ATGAGCGCTGCCGCGTTGAAGAGCCGGAATTACGCACCATTCCCGGCCGTCAGGTTAAATGTCACACACCGCTGGATGAT GCGGGGAGGCCGACCGTATGA
Upstream 100 bases:
>100_bases GCGTGGCGATCCTGCTGACGGTGCTTGCATTTAACCTGATGGGGGACGGCTTGCGTGATGCTCTCGACCCCAAACTCAAG CAGTAAAGAGGACGAGAGAG
Downstream 100 bases:
>100_bases GCCAGAACCAACCCTTATTGCAGGCGATTGACCTGAAGAAACACTACCCGGTCAAGAAGGGCATCTTTGCCCCGGAAAGG CTGGTTAAAGCGCTGGACGG
Product: dipeptide transporter ATP-binding subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MALLNVDKLSVHFGDEGTPFRAVDRISYSVEQGQVVGIVGESGSGKSVSSLAIMGLIDFPGKVMAEKLEFNGQDLRKISE KERRQLVGSEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRRTRRQRAIDLLTQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQRENMALLLITHDLALVSEAAHHIIVMYAGQVVESGKASE IFRAPRHPYTQALLRALPEFAVDKARLASLPGVVPGKYDRPSGCLLNPRCPYANERCRVEEPELRTIPGRQVKCHTPLDD AGRPTV
Sequences:
>Translated_326_residues MALLNVDKLSVHFGDEGTPFRAVDRISYSVEQGQVVGIVGESGSGKSVSSLAIMGLIDFPGKVMAEKLEFNGQDLRKISE KERRQLVGSEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRRTRRQRAIDLLTQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQRENMALLLITHDLALVSEAAHHIIVMYAGQVVESGKASE IFRAPRHPYTQALLRALPEFAVDKARLASLPGVVPGKYDRPSGCLLNPRCPYANERCRVEEPELRTIPGRQVKCHTPLDD AGRPTV >Mature_325_residues ALLNVDKLSVHFGDEGTPFRAVDRISYSVEQGQVVGIVGESGSGKSVSSLAIMGLIDFPGKVMAEKLEFNGQDLRKISEK ERRQLVGSEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRRTRRQRAIDLLTQVGIPDPASRLDVYPHQLSGGMSQR VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQRENMALLLITHDLALVSEAAHHIIVMYAGQVVESGKASEI FRAPRHPYTQALLRALPEFAVDKARLASLPGVVPGKYDRPSGCLLNPRCPYANERCRVEEPELRTIPGRQVKCHTPLDDA GRPTV
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=247, Percent_Identity=30.3643724696356, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4505771, Length=247, Percent_Identity=30.3643724696356, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=247, Percent_Identity=30.3643724696356, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI148612844, Length=228, Percent_Identity=29.3859649122807, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI255708477, Length=228, Percent_Identity=29.3859649122807, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI9665248, Length=220, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536378, Length=248, Percent_Identity=29.8387096774194, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI11967969, Length=219, Percent_Identity=28.310502283105, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789963, Length=327, Percent_Identity=88.3792048929664, Blast_Score=597, Evalue=1e-172, Organism=Escherichia coli, GI48994883, Length=319, Percent_Identity=44.5141065830721, Blast_Score=285, Evalue=3e-78, Organism=Escherichia coli, GI1787548, Length=329, Percent_Identity=43.7689969604863, Blast_Score=270, Evalue=1e-73, Organism=Escherichia coli, GI1787759, Length=296, Percent_Identity=43.5810810810811, Blast_Score=258, Evalue=4e-70, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=48.5074626865672, Blast_Score=251, Evalue=6e-68, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=47.6744186046512, Blast_Score=236, Evalue=2e-63, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=38.3435582822086, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI1789962, Length=298, Percent_Identity=37.5838926174497, Blast_Score=204, Evalue=8e-54, Organism=Escherichia coli, GI1787758, Length=310, Percent_Identity=35.8064516129032, Blast_Score=187, Evalue=9e-49, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=34.9019607843137, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=35.042735042735, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1787547, Length=263, Percent_Identity=32.6996197718631, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1789891, Length=240, Percent_Identity=35.4166666666667, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1786398, Length=262, Percent_Identity=33.206106870229, Blast_Score=121, Evalue=8e-29, Organism=Escherichia coli, GI1789032, Length=232, Percent_Identity=34.4827586206897, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=30.7086614173228, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=29.9212598425197, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=33.1858407079646, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788644, Length=180, Percent_Identity=31.6666666666667, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=35.3846153846154, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=34.8017621145374, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=26.0869565217391, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=31.4814814814815, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787712, Length=251, Percent_Identity=27.8884462151394, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787105, Length=268, Percent_Identity=30.5970149253731, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=29.7071129707113, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=26.0683760683761, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=27.1551724137931, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=30.5309734513274, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787370, Length=238, Percent_Identity=26.890756302521, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=29.3103448275862, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=28.3842794759825, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=26.4840182648402, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=29.1479820627803, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=230, Percent_Identity=27.8260869565217, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=26.8398268398268, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=24.6861924686192, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=27.8538812785388, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=24.6575342465753, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=26.5486725663717, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1788053, Length=194, Percent_Identity=27.8350515463918, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786698, Length=216, Percent_Identity=26.8518518518519, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788002, Length=230, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=256, Percent_Identity=29.296875, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193209708, Length=217, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=28.1632653061224, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=29.1479820627803, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=27.9475982532751, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17541710, Length=227, Percent_Identity=27.7533039647577, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567269, Length=233, Percent_Identity=27.8969957081545, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=225, Percent_Identity=29.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=231, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=240, Percent_Identity=27.5, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322640, Length=253, Percent_Identity=28.0632411067194, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=225, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641565, Length=223, Percent_Identity=32.2869955156951, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574150, Length=221, Percent_Identity=25.7918552036199, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007328, Length=221, Percent_Identity=25.7918552036199, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574744, Length=232, Percent_Identity=27.1551724137931, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=224, Percent_Identity=30.3571428571429, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35866; Mature: 35735
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLNVDKLSVHFGDEGTPFRAVDRISYSVEQGQVVGIVGESGSGKSVSSLAIMGLIDFP CCEEEEEEEEEEECCCCCCHHHHHHHHHEECCCEEEEEEECCCCCCCHHHEEEEEEECCC GKVMAEKLEFNGQDLRKISEKERRQLVGSEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC GGNRRTRRQRAIDLLTQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLELQQRENMALLLITHDLALVSEAAHHIIVMYAGQVVESGKASE CCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHEEEEEEECHHHCCCCHHH IFRAPRHPYTQALLRALPEFAVDKARLASLPGVVPGKYDRPSGCLLNPRCPYANERCRVE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC EPELRTIPGRQVKCHTPLDDAGRPTV CCCCCCCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure ALLNVDKLSVHFGDEGTPFRAVDRISYSVEQGQVVGIVGESGSGKSVSSLAIMGLIDFP CEEEEEEEEEEECCCCCCHHHHHHHHHEECCCEEEEEEECCCCCCCHHHEEEEEEECCC GKVMAEKLEFNGQDLRKISEKERRQLVGSEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC GGNRRTRRQRAIDLLTQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLELQQRENMALLLITHDLALVSEAAHHIIVMYAGQVVESGKASE CCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHEEEEEEECHHHCCCCHHH IFRAPRHPYTQALLRALPEFAVDKARLASLPGVVPGKYDRPSGCLLNPRCPYANERCRVE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC EPELRTIPGRQVKCHTPLDDAGRPTV CCCCCCCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]