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The map label for this gene is psd [H]

Identifier: 157163626

GI number: 157163626

Start: 4414133

End: 4415101

Strand: Reverse

Name: psd [H]

Synonym: EcHS_A4402

Alternate gene names: 157163626

Gene position: 4415101-4414133 (Counterclockwise)

Preceding gene: 157163627

Following gene: 157163625

Centisome position: 95.08

GC content: 53.66

Gene sequence:

>969_bases
TTGTTAAATTCATTTAAACTTTCGCTACAGTACATTCTGCCGAAACTATGGCTTACTCGCCTGGCGGGTTGGGGCGCAAG
CAAGCGGGCAGGATGGCTGACAAAACTGGTTATCGATCTGTTCGTTAAATACTACAAGGTCGACATGAAAGAGGCGCAAA
AGCCGGACACCGCCAGCTACCGCACCTTTAACGAATTCTTTGTCCGTCCGCTGCGTGACGAAGTACGCCCAATCGATACC
GATCCGAATGTCCTGGTCATGCCTGCCGATGGCGTTATCAGCCAGTTGGGTAAAATCGAAGAAAATAAAATCCTGCAAGC
CAAAGGCCACAACTACAGCCTCGAAGCCCTGCTGGCAGGCAACTATCTGATGGCGGACCTGTTCCGCAACGGTACGTTTG
TGACCACTTACCTCTCCCCGCGTGACTACCATCGCGTACACATGCCGTGCAACGGTATTCTGCGTGAGATGATCTACGTG
CCGGGCGATCTCTTCTCCGTTAACCATCTCACCGCTCAGAACGTGCCGAATCTGTTTGCCCGTAACGAACGCGTGATTTG
CCTGTTCGATACCGAATTTGGCCCGATGGCGCAGATTCTGGTCGGGGCGACGATTGTAGGCAGCATTGAGACGGTCTGGG
CGGGCACCATTACGCCGCCGCGCGAAGGTATCATCAAGCGCTGGACCTGGCCTGCCGGGGAAAACGACGGTTCTGTGGCA
CTGCTGAAAGGCCAGGAAATGGGCCGCTTTAAACTCGGCTCTACCGTTATCAACCTGTTTGCACCGGGTAAAGTGAATCT
GGTTGAGCAACTGGAAAGCCTGTCTGTCACGAAAATTGGCCAGCCGCTGGCAGTATCTACCGAAACCTTTGTTACGCCAG
ACGCTGAACCCGCCCCACTTCCTGCTGAAGAGATCGAAGCAGAACACGACGCCAGCCCATTGGTTGACGATAAAAAAGAC
CAGGTCTAA

Upstream 100 bases:

>100_bases
CTGACAATTAAGCTAACCGTCGTTAGAATCGTCCCCTTTTTTTCAGGATCCGGCATGTTGGCCGGATCAGGAACGACAAA
ACAATGGCCTGGAGGCTACC

Downstream 100 bases:

>100_bases
TCCATCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGC
GACGGCCCCCGATAGCAAAC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDT
DPNVLVMPADGVISQLGKIEENKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKD
QV

Sequences:

>Translated_322_residues
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDT
DPNVLVMPADGVISQLGKIEENKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKD
QV
>Mature_322_residues
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDT
DPNVLVMPADGVISQLGKIEENKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKD
QV

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=306, Percent_Identity=30.718954248366, Blast_Score=128, Evalue=8e-30,
Organism=Escherichia coli, GI1790604, Length=322, Percent_Identity=99.6894409937888, Blast_Score=663, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71980843, Length=265, Percent_Identity=32.4528301886792, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=265, Percent_Identity=32.4528301886792, Blast_Score=125, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6321609, Length=228, Percent_Identity=32.0175438596491, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6324160, Length=162, Percent_Identity=35.1851851851852, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24649526, Length=281, Percent_Identity=29.8932384341637, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24649528, Length=281, Percent_Identity=29.8932384341637, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24649524, Length=281, Percent_Identity=29.8932384341637, Blast_Score=99, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 35934; Mature: 35934

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEENKILQAKGHNYSLEALLAG
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
NYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
CHHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHCCCHHHH
RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHEEECCCCCCHHCHHEEECCCCCCCCCCEE
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPL
EEECCCCCCEECCCCEEEEECCCCCHHHHHHHHCCHHHCCCCEEECCCEEECCCCCCCCC
PAEEIEAEHDASPLVDDKKDQV
CHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEENKILQAKGHNYSLEALLAG
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
NYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
CHHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHCCCHHHH
RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHEEECCCCCCHHCHHEEECCCCCCCCCCEE
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPL
EEECCCCCCEECCCCEEEEECCCCCHHHHHHHHCCHHHCCCCEEECCCEEECCCCCCCCC
PAEEIEAEHDASPLVDDKKDQV
CHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA