BacMap

Definition	Escherichia coli HS, complete genome.
Accession	NC_009800
Length	4,643,538

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The map label for this gene is ygcW [H]

Identifier: 157162223

GI number: 157162223

Start: 2916720

End: 2917505

Strand: Reverse

Name: ygcW [H]

Synonym: EcHS_A2913

Alternate gene names: 157162223

Gene position: 2917505-2916720 (Counterclockwise)

Preceding gene: 157162228

Following gene: 157162222

Centisome position: 62.83

GC content: 44.53

Gene sequence:

>786_bases
ATGTCAATCGAATCTCTCAATGCGTTCTCAATGGATTTTTTCTCACTGAAAGGTAAAACCGCAATTGTTACCGGTGGGAA
TAGCGGTTTAGGCCAGGCATTTGCCATGGCGTTGGCCAAAGCTGGCGCAAATATCTTTATTCCTAGTTTCGTCAAAGATA
ACGGCGAAAAAAAGGAAATGATTGAAAAACAGGGTGTTGAGGTGGACTTCATGCAGGTGGATATCACCGCAGAAGGCGCG
CCGCAGAAGATTATCGCTGCTTGCTGTGAGCGTTTCGGTACAGTTGATATTCTGGTAAACAATGCCGGTATTTGTAAGCT
GAATAAGGTGCTGGACTTCGGTCGTGCCGACTGGGATCCGATGATTGATGTGAACCTGACCGCCGCATTCGAGTTAAGCT
ATGAAGCTGCAAAAATTATGATCCCGCAGAAAAGCGGCAAAATTATTAATATCTGTTCATTGTTCTCTTACTTAGGTGGA
CAATGGTCACCTGCATATTCTGCCACTAAACATGCTCTTGCCGGATTCACCAAAGCTTATTGTGATGAACTAGGTCAATA
TAATATTCAGGTAAATGGTATTGCCCCTGGCTATTATGCAACAGATATTACGCTGGCGACACGCAGTAATCCAGAAACCA
ATCAGCGCGTTCTTGATCATATTCCGGCAAACCGTTGGGGCGATACTCAGGATTTAATGGGCGCAGCTGTATTCCTCGCA
AGTCCGGCTTCAAATTATATCAATGGGCATTTATTAGTGGTCGATGGTGGTTATTTAGTGCGCTAA

Upstream 100 bases:

>100_bases
AAATTATCTCCAGTTACCAGAGATAATGAGAAAGGTAACTTCCCTCTCGCGGGGGAAGTTACCTTTCTTTTTTTTTGCCT
TACGGAAATTGGAGCTAACT

Downstream 100 bases:

>100_bases
TCCATAACGGTGGTTTCTGTTTTCTCTTATTAATGATTATTCCATTTTTATTATCAGGAAGGAATTACTATGTCTTTATC
TCGCGCAGCGATTGTCGACC

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGEKKEMIEKQGVEVDFMQVDITAEGA
PQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGG
QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
SPASNYINGHLLVVDGGYLVR

Sequences:

>Translated_261_residues
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGEKKEMIEKQGVEVDFMQVDITAEGA
PQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGG
QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
SPASNYINGHLLVVDGGYLVR
>Mature_260_residues
SIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGEKKEMIEKQGVEVDFMQVDITAEGAP
QKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQ
WSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLAS
PASNYINGHLLVVDGGYLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=31.3807531380753, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=27.0161290322581, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=30.3030303030303, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=28.9156626506024, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=28.8065843621399, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=31.25, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=30.1204819277108, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI31542939, Length=220, Percent_Identity=29.0909090909091, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=26.4, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=30.5263157894737, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=30, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=25.4032258064516, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=29.8850574712644, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=28.7179487179487, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=29.2576419213974, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=29.9610894941634, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=25.2, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=25.4032258064516, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7657478, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=98.8505747126437, Blast_Score=535, Evalue=1e-153,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=43.6, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=40.4, Blast_Score=191, Evalue=3e-50,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.8709677419355, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=35.3413654618474, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=34.4, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.515625, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=27.710843373494, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=26.1044176706827, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=29.1497975708502, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=28.2442748091603, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=25.2631578947368, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=31.8367346938775, Blast_Score=124, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.0756972111554, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=32.7935222672065, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=31.3492063492063, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=32.8125, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.6451612903226, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=29.0322580645161, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=30.2681992337165, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=30.1115241635688, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.1787072243346, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=31.9548872180451, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=30.6513409961686, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=25.9109311740891, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=30.7116104868914, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=28.735632183908, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=29.3233082706767, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=29.1187739463602, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=28.6821705426357, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=29.6153846153846, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=257, Percent_Identity=26.8482490272374, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=30.5263157894737, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.1526717557252, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=27.7992277992278, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=28.3018867924528, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=26.7175572519084, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=30.46875, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=24.8, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=24.4, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=257, Percent_Identity=27.2373540856031, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=27.7486910994764, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=201, Percent_Identity=26.865671641791, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=25.6916996047431, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17557668, Length=204, Percent_Identity=29.9019607843137, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=205, Percent_Identity=30.7317073170732, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=25.2631578947368, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=238, Percent_Identity=27.7310924369748, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=31.7708333333333, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=26.7716535433071, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=27.6422764227642, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320089, Length=208, Percent_Identity=26.9230769230769, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=31.4516129032258, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.9838056680162, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=32.1428571428571, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.1428571428571, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=30.5555555555556, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=28.9156626506024, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=28.968253968254, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI18859837, Length=191, Percent_Identity=30.8900523560209, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24649181, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=26.6331658291457, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640442, Length=217, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644337, Length=176, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28141; Mature: 28010

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGEKKEM
CCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCHHHHH
IEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDP
HHHCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEHHHHHHCCCCCCCC
MIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY
EEEEEEEEEEEEEECEEEEEEECCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
HHHHCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHEEE
SPASNYINGHLLVVDGGYLVR
CCCCHHCCCEEEEEECCEEEC
>Mature Secondary Structure 
SIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGEKKEM
CCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCHHHHH
IEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDP
HHHCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEHHHHHHCCCCCCCC
MIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY
EEEEEEEEEEEEEECEEEEEEECCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA
HHHHCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHEEE
SPASNYINGHLLVVDGGYLVR
CCCCHHCCCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9205837 [H]