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The map label for this gene is ygcI [H]

Identifier: 157162206

GI number: 157162206

Start: 2897607

End: 2898287

Strand: Reverse

Name: ygcI [H]

Synonym: EcHS_A2896

Alternate gene names: 157162206

Gene position: 2898287-2897607 (Counterclockwise)

Preceding gene: 157162207

Following gene: 157162205

Centisome position: 62.42

GC content: 47.14

Gene sequence:

>681_bases
GTGAACATGAAATCTTATTTGATCTTGCGACTTGCTGGGCCAATGCAAGCTTGGGGACAGCCGACCTTTGAAGGAACGCG
ACCTACCGGAAGATTTCCGACCCGAAGCGGGTTATTAGGGCTACTCGGGGCTTGTCTTGGGATCCAACGTGATGATACTT
CTTCATTACAGGCGTTATCAGAGAGTGTGCAATTTGCAGTGCGCTGCGATGAACTCATTCTTGACGATCGTCGTGTGTCT
GTAACGGGGTTGCGTGATTACCATACAGTCCTTGGAGCGCGAGAAGATTACCGTGGTTTGAAAAGTCATGAAACGATTCA
AACATGGCGCGAATATTTATGTGATGCCTCCTTTACCATCGCTATCTGGTTAACACCACAGGCAACGATGGTTATGTCAG
AACTTGAAAAAGCAGTATTAAAGCCTCGGTATACACCGTATCTGGGGCGGAGAAGTTGCCCACTAACACACCCGCTTTTT
CTTGCAACATGCCAGGCATCGGATCCTCAGAAGGCGCTATTAAATTATGAGCCCGTTGGCGGCGATATATATAGTGAGGA
ATCAGTTACAGGGCATCATTTAAAATTTACGGCGCGCGACGAACCGATGATCACCTTACCTCGACAATTTGCTTCCCGAG
AATGGTATGTGATTAAAGGAGGTATGGATGTATCTCAGTAA

Upstream 100 bases:

>100_bases
CGCAATTCAGCTTGTCTGATGTAGACCCTATTACTGGTCAGGTACAGCAAATGCCTACTTTAGAACAGTTAAAGTCCTGG
GTTCGTAATAATGGCGAGGC

Downstream 100 bases:

>100_bases
AATCATCATTGCCAGGGCCTGGAGCAGGGATCTTTACCAACTTCACCAGGAATTATGGCATTTATTTCCAAACAGACCGG
ATGCTGCTCGTGATTTTCTT

Product: CRISPR-associated Cas5 family Ecoli subtype protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNMKSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVS
VTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTIAIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTHPLF
LATCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ

Sequences:

>Translated_226_residues
MNMKSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVS
VTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTIAIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTHPLF
LATCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>Mature_226_residues
MNMKSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVS
VTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTIAIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTHPLF
LATCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=224, Percent_Identity=97.3214285714286, Blast_Score=430, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 25463; Mature: 25463

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALS
CCCCCEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
ESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTI
HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCCEEE
AIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTHPLFLATCQASDPQKALLNYEPVG
EEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCC
GDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
CCCCCCCCCCCCEEEEEECCCCEEECCHHHCCCCEEEEECCCCCCC
>Mature Secondary Structure
MNMKSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALS
CCCCCEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
ESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTI
HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCCEEE
AIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTHPLFLATCQASDPQKALLNYEPVG
EEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCC
GDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
CCCCCCCCCCCCEEEEEECCCCEEECCHHHCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]