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The map label for this gene is ybjD [C]

Identifier: 157156101

GI number: 157156101

Start: 3385117

End: 3386940

Strand: Reverse

Name: ybjD [C]

Synonym: EcE24377A_3363

Alternate gene names: 157156101

Gene position: 3386940-3385117 (Counterclockwise)

Preceding gene: 157155468

Following gene: 157156759

Centisome position: 68.02

GC content: 38.21

Gene sequence:

>1824_bases
ATGAATATTCTGATAGATAAAGTACGTATATCTGGGTTTAGAGGAATATCAAATATTGAGATAACTCTCCCAAGAGTAAC
TGTTTTATTGGGACAAAATAATGCAGGGAAAACATCAGTAATAAAAGCAATGCAGTTAGCAATGGGAGACTATTCGCGTT
ACTTATCGGATGAAGATTTTCATATAGGTGAAGATGAAAAACGGCAAGAGGCTATCACTGTAGATCTTCGTTTTATAGCT
GTTGATGGTGAGACTAGGATTAAAGAGTTTTCAGAAAACTGGCAGCAAGTGTTTGGCGAGAAAATTCAGTCAGAGCCTGA
TGGAAGCCAATTTGTATGTATACGAACTACTGCAAAACCAGATCGAGTGAAGGGGGGGTACGTTGTTGAGCGGTTTCATT
TGGATATTTGGCCAGAACGTATGAACTGGCAAGATGCTAGGGTTAATAATAAGAATAGATTAGGTAAGCGATTGGAGTTT
GTACCTTTTATTCCGATTGATGCGCAAAGAGATATACATAGTGAATTGAAAGAGAAATCCTCATTCGTGGGGCGTGTGCT
ATCAAGTGTTGAGTATGACGATAAAGATGTTGCTGAGCTGGAAAGGATGGTGGCTGAAATAAATAAAGAAGCTATCGAGA
AGAGCGAACCACTCAAGCGTTTGAAAAATCACCTAGATAATTTAAACCAATCATTTGAAGGTTCAGGGCAAACAGAGCTT
ACCCCGTTTCCGAAGAAGATACGAGATCTGTCAAAGAGATTTAGTGTTAATTTTGGTGAATCTGATAAGAGTTCGTTTTC
GATGGAATATCATGGTATGGGGACACGTAGTTGGGCATCTATGTTGACAGTAAAAGCCTTTACTGAACTCTTAGTTAAAA
ATCACGAAGAAGAGGCAGAACCGTTTTTCCCAATAATGGCCGCAGAGGAACCAGAGGCACATTTGCACCCTAATGCACAG
AGGACTCTATATAGACAGCTCGTGGATGCTCCAGGGCAAGTGATTATCAGTACACACTCACCTTATATTGCTGGTTTGGC
AGAGTTGCATGAAATTAGATTCCTAAGTAAGCAAGAGAATTCGGTATGTGTATATCAGTTAAGGGATAAATTTGATGGTG
ATGATCTAAGAAAATTAAGGAGAGAAGTTGTTCACTCTCGTGGTGAGTTATTGTTTTCAAAAGCAATAGTATTATCAGAA
GGAGAAACTGAAGAGCAAGCCTTACCTGAACTTTTTGAAGCCTATACCGGAAAACATCCCTTCTCGCTTGGTATAAACTT
CGTAGGAGTTAATGGTTCCGGAGCGAAATATCGTCCATTTCTTATTTTGGCGAAAGATTTCAATATACCTGTATTCATAT
TTAGTGATGGTGAAGAACAGACAGTTAAAGATCTTAAAAAGAACTATGAAAAAGTGTTTGGGGTTACTGATATAATGAAT
GCAGCTAACATCACCATACTTGAAGGGACTGATTTTGAGGGCTATTTGTTAAGTCAAGGTTTCGATCAGTTGATTGAAAA
GACTATACATGAAATCGACGGTGATGATGCAATCGATAAGTGGATTGAAAAAAAGAATGGAACATCGTTAAAGCGGATTC
GAACTGATAAGCCAAACTGTGGCACTTGTAATCAACCAATCTTTGAAGATGTGCTGAGGAATTACATTGGTGATGATGGA
CGAGTTCGTGCAATCCTCGAAATCCTTGATTCAAGTAAGCCGCTTTATGCAAAAGCAATCACAGATAATTTGATTAAATT
ACCGAAAGAAAAATTTCCTCAGAAGATAATTGAATTATTCAAACAAATTGAGTCGGGAGTTTGA

Upstream 100 bases:

>100_bases
AGGGACTCGTAGAAAAAAGTGCTTTCCTTTCGAGAGCGAGGCTTTGAGGCTACAGGTGTTGCTAGAAAATAAGTGATTAA
TAATAAATGGGTTTGTAATA

Downstream 100 bases:

>100_bases
TATGAATCTATCAAATGCTCAGCGCCAGATCGTTGAAGCCCCTATGGATATAGCTATTCAAGTGCTTGCCTCAGCAGGTT
CTGGAAAAACTCGTGTCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: ATP-Dependent Endonuclease Of OLD Family; SMC Domain Protein; ATP-Dependent Endonuclease; Plasmid-Related Protein; Nucleoside Triphosphate Hydrolase Domain-Containing Protein; Homology With RecF Protein; P-Loop Containing Nucleoside Triphosphate Hydrolase Domain; RecF/RecN/SMC N Domain Protein; DNA Helicase Associated Protein; OLD Family Nuclease; ATP-Dependent ExoDNAse Beta Subunit; RecF-Like Protein; Ypothetical Protein YbjD.; Endonuclease; Exonuclease

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MNILIDKVRISGFRGISNIEITLPRVTVLLGQNNAGKTSVIKAMQLAMGDYSRYLSDEDFHIGEDEKRQEAITVDLRFIA
VDGETRIKEFSENWQQVFGEKIQSEPDGSQFVCIRTTAKPDRVKGGYVVERFHLDIWPERMNWQDARVNNKNRLGKRLEF
VPFIPIDAQRDIHSELKEKSSFVGRVLSSVEYDDKDVAELERMVAEINKEAIEKSEPLKRLKNHLDNLNQSFEGSGQTEL
TPFPKKIRDLSKRFSVNFGESDKSSFSMEYHGMGTRSWASMLTVKAFTELLVKNHEEEAEPFFPIMAAEEPEAHLHPNAQ
RTLYRQLVDAPGQVIISTHSPYIAGLAELHEIRFLSKQENSVCVYQLRDKFDGDDLRKLRREVVHSRGELLFSKAIVLSE
GETEEQALPELFEAYTGKHPFSLGINFVGVNGSGAKYRPFLILAKDFNIPVFIFSDGEEQTVKDLKKNYEKVFGVTDIMN
AANITILEGTDFEGYLLSQGFDQLIEKTIHEIDGDDAIDKWIEKKNGTSLKRIRTDKPNCGTCNQPIFEDVLRNYIGDDG
RVRAILEILDSSKPLYAKAITDNLIKLPKEKFPQKIIELFKQIESGV

Sequences:

>Translated_607_residues
MNILIDKVRISGFRGISNIEITLPRVTVLLGQNNAGKTSVIKAMQLAMGDYSRYLSDEDFHIGEDEKRQEAITVDLRFIA
VDGETRIKEFSENWQQVFGEKIQSEPDGSQFVCIRTTAKPDRVKGGYVVERFHLDIWPERMNWQDARVNNKNRLGKRLEF
VPFIPIDAQRDIHSELKEKSSFVGRVLSSVEYDDKDVAELERMVAEINKEAIEKSEPLKRLKNHLDNLNQSFEGSGQTEL
TPFPKKIRDLSKRFSVNFGESDKSSFSMEYHGMGTRSWASMLTVKAFTELLVKNHEEEAEPFFPIMAAEEPEAHLHPNAQ
RTLYRQLVDAPGQVIISTHSPYIAGLAELHEIRFLSKQENSVCVYQLRDKFDGDDLRKLRREVVHSRGELLFSKAIVLSE
GETEEQALPELFEAYTGKHPFSLGINFVGVNGSGAKYRPFLILAKDFNIPVFIFSDGEEQTVKDLKKNYEKVFGVTDIMN
AANITILEGTDFEGYLLSQGFDQLIEKTIHEIDGDDAIDKWIEKKNGTSLKRIRTDKPNCGTCNQPIFEDVLRNYIGDDG
RVRAILEILDSSKPLYAKAITDNLIKLPKEKFPQKIIELFKQIESGV
>Mature_607_residues
MNILIDKVRISGFRGISNIEITLPRVTVLLGQNNAGKTSVIKAMQLAMGDYSRYLSDEDFHIGEDEKRQEAITVDLRFIA
VDGETRIKEFSENWQQVFGEKIQSEPDGSQFVCIRTTAKPDRVKGGYVVERFHLDIWPERMNWQDARVNNKNRLGKRLEF
VPFIPIDAQRDIHSELKEKSSFVGRVLSSVEYDDKDVAELERMVAEINKEAIEKSEPLKRLKNHLDNLNQSFEGSGQTEL
TPFPKKIRDLSKRFSVNFGESDKSSFSMEYHGMGTRSWASMLTVKAFTELLVKNHEEEAEPFFPIMAAEEPEAHLHPNAQ
RTLYRQLVDAPGQVIISTHSPYIAGLAELHEIRFLSKQENSVCVYQLRDKFDGDDLRKLRREVVHSRGELLFSKAIVLSE
GETEEQALPELFEAYTGKHPFSLGINFVGVNGSGAKYRPFLILAKDFNIPVFIFSDGEEQTVKDLKKNYEKVFGVTDIMN
AANITILEGTDFEGYLLSQGFDQLIEKTIHEIDGDDAIDKWIEKKNGTSLKRIRTDKPNCGTCNQPIFEDVLRNYIGDDG
RVRAILEILDSSKPLYAKAITDNLIKLPKEKFPQKIIELFKQIESGV

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=211, Percent_Identity=25.5924170616114, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69208; Mature: 69208

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIDKVRISGFRGISNIEITLPRVTVLLGQNNAGKTSVIKAMQLAMGDYSRYLSDEDF
CCEEEEEEEECCCCCCCCEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
HIGEDEKRQEAITVDLRFIAVDGETRIKEFSENWQQVFGEKIQSEPDGSQFVCIRTTAKP
CCCCCHHHCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
DRVKGGYVVERFHLDIWPERMNWQDARVNNKNRLGKRLEFVPFIPIDAQRDIHSELKEKS
CCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
SFVGRVLSSVEYDDKDVAELERMVAEINKEAIEKSEPLKRLKNHLDNLNQSFEGSGQTEL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TPFPKKIRDLSKRFSVNFGESDKSSFSMEYHGMGTRSWASMLTVKAFTELLVKNHEEEAE
CCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHCC
PFFPIMAAEEPEAHLHPNAQRTLYRQLVDAPGQVIISTHSPYIAGLAELHEIRFLSKQEN
CCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC
SVCVYQLRDKFDGDDLRKLRREVVHSRGELLFSKAIVLSEGETEEQALPELFEAYTGKHP
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCC
FSLGINFVGVNGSGAKYRPFLILAKDFNIPVFIFSDGEEQTVKDLKKNYEKVFGVTDIMN
EEECEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
AANITILEGTDFEGYLLSQGFDQLIEKTIHEIDGDDAIDKWIEKKNGTSLKRIRTDKPNC
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCCCCC
GTCNQPIFEDVLRNYIGDDGRVRAILEILDSSKPLYAKAITDNLIKLPKEKFPQKIIELF
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHHHHHHH
KQIESGV
HHHHCCC
>Mature Secondary Structure
MNILIDKVRISGFRGISNIEITLPRVTVLLGQNNAGKTSVIKAMQLAMGDYSRYLSDEDF
CCEEEEEEEECCCCCCCCEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
HIGEDEKRQEAITVDLRFIAVDGETRIKEFSENWQQVFGEKIQSEPDGSQFVCIRTTAKP
CCCCCHHHCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
DRVKGGYVVERFHLDIWPERMNWQDARVNNKNRLGKRLEFVPFIPIDAQRDIHSELKEKS
CCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
SFVGRVLSSVEYDDKDVAELERMVAEINKEAIEKSEPLKRLKNHLDNLNQSFEGSGQTEL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TPFPKKIRDLSKRFSVNFGESDKSSFSMEYHGMGTRSWASMLTVKAFTELLVKNHEEEAE
CCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHCC
PFFPIMAAEEPEAHLHPNAQRTLYRQLVDAPGQVIISTHSPYIAGLAELHEIRFLSKQEN
CCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC
SVCVYQLRDKFDGDDLRKLRREVVHSRGELLFSKAIVLSEGETEEQALPELFEAYTGKHP
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCC
FSLGINFVGVNGSGAKYRPFLILAKDFNIPVFIFSDGEEQTVKDLKKNYEKVFGVTDIMN
EEECEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
AANITILEGTDFEGYLLSQGFDQLIEKTIHEIDGDDAIDKWIEKKNGTSLKRIRTDKPNC
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCCCCC
GTCNQPIFEDVLRNYIGDDGRVRAILEILDSSKPLYAKAITDNLIKLPKEKFPQKIIELF
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHHHHHHH
KQIESGV
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA