Click here to switch to the map view.

The map label for this gene is yhcF [H]

Identifier: 156978200

GI number: 156978200

Start: 2085533

End: 2086033

Strand: Direct

Name: yhcF [H]

Synonym: VIBHAR_07005

Alternate gene names: 156978200

Gene position: 2085533-2086033 (Clockwise)

Preceding gene: 156978197

Following gene: 156978201

Centisome position: 94.62

GC content: 43.91

Gene sequence:

>501_bases
ATGCCAATTTTGGCGAAATGTCATCAACAAAAGGGATTGAGAAAACAACTCAAGAAGATTGGCGCTTTCTATCTCACCCT
CATGGTGTTATACATATATATAACACCAACTCAGCCAAGGAAACCAATCATGACGCATTGGCATGATCGCCAACCGATTT
TCCGTCAGTTGGCTGACCAGATCACCCAGCAAATATTGCAAGGCATCTGGCAAGAGGGCGAAGCTTTGCCTTCGGTACGC
AGTGTCTCTGCGGATATGAAGATCAATCACCTGACGGTCATGAAAGGCTATCAGTTATTGGTTGATGAAGGATTGGTTGA
GAAGAAACGTGGGCAAGGCATGTTTGTCGCCCAAGGTGCAAAAAAACAGCTGCTTGCTGATGAAAAAGCACGTTTCCTTG
AACAACAAATTCCGCAGATCGCCGACACACTACAACGTCTGGATATGTCACTTGATGAATTTATCCAACAAATCAAAACA
CATATTGAAGGTGACCAATGA

Upstream 100 bases:

>100_bases
TTCATCGCCCTTCTCAACTTATGAGAAGTGAACAATTTTTTACCGTTTTTTTGAGGGCAAAAACGTATGCGATTACGCGC
AAATTTTGCGTGAAACTCCG

Downstream 100 bases:

>100_bases
GCGCATTAGTCAGTGTAAAACACGTCTCCAAGCAATATCGTCAGCAGGGTGAAGCACTGCATGACGTGAGCTTTGATCTA
CAAGCGGGTCAGGTGCTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPILAKCHQQKGLRKQLKKIGAFYLTLMVLYIYITPTQPRKPIMTHWHDRQPIFRQLADQITQQILQGIWQEGEALPSVR
SVSADMKINHLTVMKGYQLLVDEGLVEKKRGQGMFVAQGAKKQLLADEKARFLEQQIPQIADTLQRLDMSLDEFIQQIKT
HIEGDQ

Sequences:

>Translated_166_residues
MPILAKCHQQKGLRKQLKKIGAFYLTLMVLYIYITPTQPRKPIMTHWHDRQPIFRQLADQITQQILQGIWQEGEALPSVR
SVSADMKINHLTVMKGYQLLVDEGLVEKKRGQGMFVAQGAKKQLLADEKARFLEQQIPQIADTLQRLDMSLDEFIQQIKT
HIEGDQ
>Mature_165_residues
PILAKCHQQKGLRKQLKKIGAFYLTLMVLYIYITPTQPRKPIMTHWHDRQPIFRQLADQITQQILQGIWQEGEALPSVRS
VSADMKINHLTVMKGYQLLVDEGLVEKKRGQGMFVAQGAKKQLLADEKARFLEQQIPQIADTLQRLDMSLDEFIQQIKTH
IEGDQ

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 19192; Mature: 19061

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILAKCHQQKGLRKQLKKIGAFYLTLMVLYIYITPTQPRKPIMTHWHDRQPIFRQLADQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHH
ITQQILQGIWQEGEALPSVRSVSADMKINHLTVMKGYQLLVDEGLVEKKRGQGMFVAQGA
HHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCH
KKQLLADEKARFLEQQIPQIADTLQRLDMSLDEFIQQIKTHIEGDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PILAKCHQQKGLRKQLKKIGAFYLTLMVLYIYITPTQPRKPIMTHWHDRQPIFRQLADQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHH
ITQQILQGIWQEGEALPSVRSVSADMKINHLTVMKGYQLLVDEGLVEKKRGQGMFVAQGA
HHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCH
KKQLLADEKARFLEQQIPQIADTLQRLDMSLDEFIQQIKTHIEGDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]