Definition Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
Accession NC_009784
Length 2,204,018

Click here to switch to the map view.

The map label for this gene is 156978154

Identifier: 156978154

GI number: 156978154

Start: 2052795

End: 2053709

Strand: Reverse

Name: 156978154

Synonym: VIBHAR_06959

Alternate gene names: NA

Gene position: 2053709-2052795 (Counterclockwise)

Preceding gene: 156978155

Following gene: 156978153

Centisome position: 93.18

GC content: 42.84

Gene sequence:

>915_bases
ATGAAATCTAAAGATGATATAGAGCTAGCATCCTCTATCGCATCTCAGTGCGAAGAAATAGCTGTTATACCTGGCTCTGC
ACAAATAACACCTATTATTATTTATGGTAAGCGCCATATTAAAAAAGAAAAACTTGTCGAATTTAACAGTGCGTACCAAG
TTTTTTCTAAGTCAACTTACAAAGAGAACCCTGACATAAAGGCAATATTTGCCTTCCCAGACATAGAGGATCCATTTGCA
TACCGGCATATCGTATGGGGGCGAAATGCTGATGCTCTTAACGATTACTTGTCTCGCCCTACTAACGGAGACCCCTTGTG
GGATATGTATGATTGCTCACCTGAGAGACCAGATATTTTAACTGTTTACGGCGGGTGGGATGAGGAGATTAAAACGAAAG
CTCAAGCAGTTTCCGGCATACACTACGAGTTTAAAAAATGTATTGCTGGCTTCATCAAGCCTGATGGTGGTAAAGAAGAA
GGTCCCCCACTGTTTGGTTTCACTATGCGTTATGTGAAACCAGGGCGAATACAAGATCTAGGCACCTCATTCCAGACTGT
ATGCGATATGTGGTATGAAAAGATCCCAGGTATTTTGATGGCTGCCGTCTTTCCTGATGAGAATATACCGAATTTGGTTC
ATGATTTGAGAATATTTGCTAACCACAGCGCATTTTTAGCGCATGTAGACAAATCAGATAAAGACTTAACGGAAGCTATG
GGAGTTTGGTTTGAAAATTACGACACAAGCGTCCCTTTCTCAGGTCAGCTTTACGCCGCCAACACTAAAGATGATGCACT
ACATACAAGCTCGATCAAGTCCCGTTCAACGCCGCGAGCCCAGCTTGAGACGTTCCATTTTGGGGAGTCTGGTATGTTGG
GCCAGATGCCAAATATGACTAGAAACGACTCGTGA

Upstream 100 bases:

>100_bases
TTTATCCAGCTTATGATAAGAAACACTAGTTCTACGTGAACAAAAATGAAACCTCAACTATTAATCATAGGTAGTTGAGG
TAACGAAGTTAGGAGAAAGT

Downstream 100 bases:

>100_bases
ACAATCGAGTCTAATAATTCGAAATACCAGGCCAATGTTACGGCGTTTAATGCCTCTACATTGGCAGGTGCGCAATGCAT
TAACCATAGTATTTCCTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTYKENPDIKAIFAFPDIEDPFA
YRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDILTVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEE
GPPLFGFTMRYVKPGRIQDLGTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM
GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMTRNDS

Sequences:

>Translated_304_residues
MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTYKENPDIKAIFAFPDIEDPFA
YRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDILTVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEE
GPPLFGFTMRYVKPGRIQDLGTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM
GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMTRNDS
>Mature_304_residues
MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTYKENPDIKAIFAFPDIEDPFA
YRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDILTVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEE
GPPLFGFTMRYVKPGRIQDLGTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM
GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMTRNDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34229; Mature: 34229

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTY
CCCCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHCC
KENPDIKAIFAFPDIEDPFAYRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDIL
CCCCCEEEEEECCCCCCCHHHEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEE
TVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEEGPPLFGFTMRYVKPGRIQDL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCHHHH
GTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM
CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMT
HHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCC
RNDS
CCCC
>Mature Secondary Structure
MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTY
CCCCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHCC
KENPDIKAIFAFPDIEDPFAYRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDIL
CCCCCEEEEEECCCCCCCHHHEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEE
TVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEEGPPLFGFTMRYVKPGRIQDL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCHHHH
GTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM
CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMT
HHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCC
RNDS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA