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The map label for this gene is yfiN [C]

Identifier: 156978144

GI number: 156978144

Start: 2043834

End: 2045018

Strand: Direct

Name: yfiN [C]

Synonym: VIBHAR_06949

Alternate gene names: 156978144

Gene position: 2043834-2045018 (Clockwise)

Preceding gene: 156978143

Following gene: 156978146

Centisome position: 92.73

GC content: 45.57

Gene sequence:

>1185_bases
ATGTCGAAATTGGCCGGAGCACGCCTAGAGGAAATGGCTGATATCCGATCGACAAGAAAGAGGAAGATCGTTTTTCTCTG
TTCTAGCATCGCCACTGCATTTCTAACCTATGGCTCTGTACTGCACTATCTTGAAGGCAACTGGGGGCTCAGCTTACTCA
TCGGAGTATGTGCGTTGGCATGTTTAACCATCAGCTACCTGATCAAAGTACGTGGTCACCACCAATACGCTGATTTGTTG
CTCACAGGCGTATTGATGTTCGATGGGCTGTTGCTGCTCCTATATAGCGATGCGCCCTCCGGTCGATTACTTTGGCTCTA
TCCGATTGTGGCTGCCATCATCTTGATTAACGAGTTCAAGGTCGGTCTGCTGTTTAGCGTGACATATTCTCTCATCATCT
TTTTCGATTTGACCTTTTTAGAGAGTGTACCTACCGCCAGTGAGATGACTGAACGCCGTTTTATGTTCACCCTTGTGGCG
ATTTGTTTTGTCTGCCATACCTTCTCTTACTACTACTCCAAGGTCGTGAACTACATCCAAACGCTTTATCGTGAAGGCAT
TGAGGAACTGGCATACCTAGACCAATTAACGGGGCTCGCTAACCGTTGGAGCTTTGAGGCTTGGGCGCGCGCGAAGCTGG
AAGAGTTAGATCAAACTCAGAATAATACGGTCACTGCACTGGTTTTCCTCGATATTGATAACTTTAAGCACATCAATGAC
AACTACGGCCATGATGTGGGCGATCGCGTTTTAAAACACTTTGCGACTCGCTTGAAAAACAATATTCGCAACAAAGACCG
AAAGACGGACAAACACGATTATTCGATCGCTCGCTTTGCGGGAGATGAGTTTGTGTTGATGCTTTACGATGTGCACTGCA
AGAAGGACCTAGATAATATCCTTGATCGTATCGTAAACCTGTTTAATAAAGGCTATCAGACGGAAGACAATATCAATGAG
TTGACCATGAGTGTGGGAGCAGCAATTTATGGCCAAGATGCTAAAGATTTATCTGAGCTTACTCGCTGTGCAGACAAAGC
CATGTACGCCGCAAAGCATACTGGCAAAAACCAGTATGCGTATTACGAACATTGCTCAAATGCAGAAGAGTTACACCATC
AAAGACATTCGTTGGTTGGCGGAATGGGTAATGTGACTTCATTACAGCGAGATGCCAGCTTGTAA

Upstream 100 bases:

>100_bases
CAAACATGCTTCATATCACAAATAAGGACTTTGCTATTCCATCTAATAATTAATTACGACCTAGAATAAGTATCAGATAA
GTCTAAAGTAGGGATACACA

Downstream 100 bases:

>100_bases
GAGTGAATCACTCAAACATGGCTTAGGAATACATATACATCGCCCATAAACCGACAAGCAAAAACGTGATAAGCCAGATC
ACTTGGCCAATTTTTCTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSKLAGARLEEMADIRSTRKRKIVFLCSSIATAFLTYGSVLHYLEGNWGLSLLIGVCALACLTISYLIKVRGHHQYADLL
LTGVLMFDGLLLLLYSDAPSGRLLWLYPIVAAIILINEFKVGLLFSVTYSLIIFFDLTFLESVPTASEMTERRFMFTLVA
ICFVCHTFSYYYSKVVNYIQTLYREGIEELAYLDQLTGLANRWSFEAWARAKLEELDQTQNNTVTALVFLDIDNFKHIND
NYGHDVGDRVLKHFATRLKNNIRNKDRKTDKHDYSIARFAGDEFVLMLYDVHCKKDLDNILDRIVNLFNKGYQTEDNINE
LTMSVGAAIYGQDAKDLSELTRCADKAMYAAKHTGKNQYAYYEHCSNAEELHHQRHSLVGGMGNVTSLQRDASL

Sequences:

>Translated_394_residues
MSKLAGARLEEMADIRSTRKRKIVFLCSSIATAFLTYGSVLHYLEGNWGLSLLIGVCALACLTISYLIKVRGHHQYADLL
LTGVLMFDGLLLLLYSDAPSGRLLWLYPIVAAIILINEFKVGLLFSVTYSLIIFFDLTFLESVPTASEMTERRFMFTLVA
ICFVCHTFSYYYSKVVNYIQTLYREGIEELAYLDQLTGLANRWSFEAWARAKLEELDQTQNNTVTALVFLDIDNFKHIND
NYGHDVGDRVLKHFATRLKNNIRNKDRKTDKHDYSIARFAGDEFVLMLYDVHCKKDLDNILDRIVNLFNKGYQTEDNINE
LTMSVGAAIYGQDAKDLSELTRCADKAMYAAKHTGKNQYAYYEHCSNAEELHHQRHSLVGGMGNVTSLQRDASL
>Mature_393_residues
SKLAGARLEEMADIRSTRKRKIVFLCSSIATAFLTYGSVLHYLEGNWGLSLLIGVCALACLTISYLIKVRGHHQYADLLL
TGVLMFDGLLLLLYSDAPSGRLLWLYPIVAAIILINEFKVGLLFSVTYSLIIFFDLTFLESVPTASEMTERRFMFTLVAI
CFVCHTFSYYYSKVVNYIQTLYREGIEELAYLDQLTGLANRWSFEAWARAKLEELDQTQNNTVTALVFLDIDNFKHINDN
YGHDVGDRVLKHFATRLKNNIRNKDRKTDKHDYSIARFAGDEFVLMLYDVHCKKDLDNILDRIVNLFNKGYQTEDNINEL
TMSVGAAIYGQDAKDLSELTRCADKAMYAAKHTGKNQYAYYEHCSNAEELHHQRHSLVGGMGNVTSLQRDASL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=36.9047619047619, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=202, Percent_Identity=31.6831683168317, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=245, Percent_Identity=27.7551020408163, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI145693134, Length=195, Percent_Identity=29.7435897435897, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=31.2849162011173, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=28.4090909090909, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=227, Percent_Identity=30.8370044052863, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=31.1475409836066, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787056, Length=171, Percent_Identity=32.7485380116959, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=28.6549707602339, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 44928; Mature: 44797

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAGARLEEMADIRSTRKRKIVFLCSSIATAFLTYGSVLHYLEGNWGLSLLIGVCALA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
CLTISYLIKVRGHHQYADLLLTGVLMFDGLLLLLYSDAPSGRLLWLYPIVAAIILINEFK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHH
VGLLFSVTYSLIIFFDLTFLESVPTASEMTERRFMFTLVAICFVCHTFSYYYSKVVNYIQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLYREGIEELAYLDQLTGLANRWSFEAWARAKLEELDQTQNNTVTALVFLDIDNFKHIND
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
NYGHDVGDRVLKHFATRLKNNIRNKDRKTDKHDYSIARFAGDEFVLMLYDVHCKKDLDNI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEEHHHHHHHHHHH
LDRIVNLFNKGYQTEDNINELTMSVGAAIYGQDAKDLSELTRCADKAMYAAKHTGKNQYA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
YYEHCSNAEELHHQRHSLVGGMGNVTSLQRDASL
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure 
SKLAGARLEEMADIRSTRKRKIVFLCSSIATAFLTYGSVLHYLEGNWGLSLLIGVCALA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
CLTISYLIKVRGHHQYADLLLTGVLMFDGLLLLLYSDAPSGRLLWLYPIVAAIILINEFK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHH
VGLLFSVTYSLIIFFDLTFLESVPTASEMTERRFMFTLVAICFVCHTFSYYYSKVVNYIQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLYREGIEELAYLDQLTGLANRWSFEAWARAKLEELDQTQNNTVTALVFLDIDNFKHIND
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
NYGHDVGDRVLKHFATRLKNNIRNKDRKTDKHDYSIARFAGDEFVLMLYDVHCKKDLDNI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEEHHHHHHHHHHH
LDRIVNLFNKGYQTEDNINELTMSVGAAIYGQDAKDLSELTRCADKAMYAAKHTGKNQYA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
YYEHCSNAEELHHQRHSLVGGMGNVTSLQRDASL
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]