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The map label for this gene is araQ [H]

Identifier: 156978134

GI number: 156978134

Start: 2034921

End: 2035805

Strand: Reverse

Name: araQ [H]

Synonym: VIBHAR_06939

Alternate gene names: 156978134

Gene position: 2035805-2034921 (Counterclockwise)

Preceding gene: 156978135

Following gene: 156978133

Centisome position: 92.37

GC content: 51.07

Gene sequence:

>885_bases
ATGAGTACTAACACTTTACCTGCGGCGCAGCGTTGGCGTCCTAGCGATCGCAGCATCGAGATCTTTACCAAGATACTGAT
GGTGATGCTCGGCACTGTGTTGGTGGTGTCTGCCATCATGACTGTGTTCCCATTCATTTGGTCGGCGTTGCTATCGACGC
GTGACCGTACTGAAATCTTCGGCACAGGCATCAGCTTTGCGATTGGTGACAGCCTTGCGGTGAACTACGCAAAGCTACTG
GAAATCATGCCGTTCTGGCAGGCGATGTTTAACTCCATCTACATCGCGTTCCTAGGCACCACGATTTCACTGCTGTTTTG
TAGCATGGGCGGCTATGCGTTTGCAGTCTACAAGTTCAAAGGCAAAAACGTGCTGTTTGGTATGTTGGTTGGCTCGATGA
TGATTCCACCTGTACTGAGCTTGATCCCGTACTTCATGATCGTGAAATTCCTCGGCTTGCTCGATAACCACCTTGCGGTT
TGGTTACCGTTCACCACCACGCCATTTGGCATCTTCTTGATGCGTCAGCACGTGGTGGCATCGATTCCGAAAGAGCTGTT
AGAAGCGGCGAAGCTCGATGGCGCGGGTGAATTTAGAACTTACTGGAGCGTGGTATTGCCACTGATGAAACCGGCGCTCG
CAACCCTAGCAATCGTGCAGTTTGTTTTCTTCTGGAACATGTTCATGCAGCCACTTGTGGTACTGACAACGCCAGAAAAC
TACGTGATTACGCAGGCACTGCGAAGCGTGCAGGGCATTCCGAATACGCCGTGGGGAGCGGTGATGCTCGGAACCACCAT
CTCCATTTTACCGTTAGTGATTACTTACTTATTTGCCTCAAAACAGATGATCAGCGGCTTGACCTCTGGTGCCGTCAAGG
GCTAA

Upstream 100 bases:

>100_bases
ACAGCGTCAGCAATTTCATGTCTGCTCTTTACCTTGATTGCAGGCTGTACAGCGGTTCAATTCTTCTTCTTCGGTAAGAA
AGGTCTAGGGGAGCAATAAG

Downstream 100 bases:

>100_bases
GCGAAACAAAAGGTTTTATAACAATGAATAAATTCCAACTACCACAAGATTCAAAATTACGTAGCCCAGAGTTCTTATTT
GGTGTCGCAACCTCTTCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSTNTLPAAQRWRPSDRSIEIFTKILMVMLGTVLVVSAIMTVFPFIWSALLSTRDRTEIFGTGISFAIGDSLAVNYAKLL
EIMPFWQAMFNSIYIAFLGTTISLLFCSMGGYAFAVYKFKGKNVLFGMLVGSMMIPPVLSLIPYFMIVKFLGLLDNHLAV
WLPFTTTPFGIFLMRQHVVASIPKELLEAAKLDGAGEFRTYWSVVLPLMKPALATLAIVQFVFFWNMFMQPLVVLTTPEN
YVITQALRSVQGIPNTPWGAVMLGTTISILPLVITYLFASKQMISGLTSGAVKG

Sequences:

>Translated_294_residues
MSTNTLPAAQRWRPSDRSIEIFTKILMVMLGTVLVVSAIMTVFPFIWSALLSTRDRTEIFGTGISFAIGDSLAVNYAKLL
EIMPFWQAMFNSIYIAFLGTTISLLFCSMGGYAFAVYKFKGKNVLFGMLVGSMMIPPVLSLIPYFMIVKFLGLLDNHLAV
WLPFTTTPFGIFLMRQHVVASIPKELLEAAKLDGAGEFRTYWSVVLPLMKPALATLAIVQFVFFWNMFMQPLVVLTTPEN
YVITQALRSVQGIPNTPWGAVMLGTTISILPLVITYLFASKQMISGLTSGAVKG
>Mature_293_residues
STNTLPAAQRWRPSDRSIEIFTKILMVMLGTVLVVSAIMTVFPFIWSALLSTRDRTEIFGTGISFAIGDSLAVNYAKLLE
IMPFWQAMFNSIYIAFLGTTISLLFCSMGGYAFAVYKFKGKNVLFGMLVGSMMIPPVLSLIPYFMIVKFLGLLDNHLAVW
LPFTTTPFGIFLMRQHVVASIPKELLEAAKLDGAGEFRTYWSVVLPLMKPALATLAIVQFVFFWNMFMQPLVVLTTPENY
VITQALRSVQGIPNTPWGAVMLGTTISILPLVITYLFASKQMISGLTSGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=25.0936329588015, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787571, Length=188, Percent_Identity=27.6595744680851, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=28.8990825688073, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32572; Mature: 32440

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNTLPAAQRWRPSDRSIEIFTKILMVMLGTVLVVSAIMTVFPFIWSALLSTRDRTEIF
CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
GTGISFAIGDSLAVNYAKLLEIMPFWQAMFNSIYIAFLGTTISLLFCSMGGYAFAVYKFK
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
GKNVLFGMLVGSMMIPPVLSLIPYFMIVKFLGLLDNHLAVWLPFTTTPFGIFLMRQHVVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
SIPKELLEAAKLDGAGEFRTYWSVVLPLMKPALATLAIVQFVFFWNMFMQPLVVLTTPEN
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
YVITQALRSVQGIPNTPWGAVMLGTTISILPLVITYLFASKQMISGLTSGAVKG
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STNTLPAAQRWRPSDRSIEIFTKILMVMLGTVLVVSAIMTVFPFIWSALLSTRDRTEIF
CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
GTGISFAIGDSLAVNYAKLLEIMPFWQAMFNSIYIAFLGTTISLLFCSMGGYAFAVYKFK
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
GKNVLFGMLVGSMMIPPVLSLIPYFMIVKFLGLLDNHLAVWLPFTTTPFGIFLMRQHVVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
SIPKELLEAAKLDGAGEFRTYWSVVLPLMKPALATLAIVQFVFFWNMFMQPLVVLTTPEN
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
YVITQALRSVQGIPNTPWGAVMLGTTISILPLVITYLFASKQMISGLTSGAVKG
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]