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The map label for this gene is yibH [H]

Identifier: 156978112

GI number: 156978112

Start: 2014426

End: 2015496

Strand: Direct

Name: yibH [H]

Synonym: VIBHAR_06917

Alternate gene names: 156978112

Gene position: 2014426-2015496 (Clockwise)

Preceding gene: 156978110

Following gene: 156978113

Centisome position: 91.4

GC content: 36.32

Gene sequence:

>1071_bases
ATGAATTTAACTCTCCATAATCTTTCGAAACCTCTAACTTTAGCTGCCATTGTTGTATTGGTAATATCTGCTGTTAGCAT
GATTCTTAGTGATTTGTACTCTCCATTTACAACGGATAGTTACGTGATAAGTGATATATCGAGAATATCTACTGATATTG
ATGGTGTGGTAGAACACATATACGTAAGAAATGGTCAATTCGTTAAGAAAGGTGACCCTCTTTTTAAAATTAAAACTGAC
GAACTTCAATCTAAGTACGATACCGCTTATGCAAATTTGATTATTCTAGAACAGAATTTTAAGAAGATTGAACTTGAAAT
GGGTTTGATTGAAAGTGAAATAAAACAAAAAACAGAAATTGCTAGTAATAAAAAACTGCACTATATCAGGATGAAAACCC
TTTTACGCAATAAAGCTATTAATCAGCAACAATATGATGATGCTTATACAGCGTACGTTGATGAAATAAGAGAAATAGAA
CAGCTTAAAATCAAGTTACAGATTAACCACGTTAAGCTTGGCTCAGAACAAGGTGGAAACGGTGGGCTGATGTTAGGGAA
AGCTATATTAGAAAAAGCTAGGAAAAACATTAATAAAGCTACAATACATGCTCCATTTGACGGAGTAATCACCAATATGC
AGCTCGTAAAAGGTAATTTTGTATCAAAGAGCTCACCGCAAATCGTCATAACCTCTCAATCACAGAGACAGCTCGTCGCT
GATTTTAACGAAAAAGGTTTAGATCTTTTACCCAATGCGGATTGCTTGGTTGTGTTTGATGCTATACCGGGCAGAATATT
CAAGACACAAGTAACTAGCATAGACCAAGCGATAACTGTAACAGGGGTTGGCGATCAAAAGTTAGGAGAGACCGCTAAGG
TAGCTCAGGGAGATAGATGGGTACGCAAAAGCCAATACGTTCGTTCTACTCTGAATATGCCAGATGTTGATAGCAGTCTA
ATTTCAGGCTCTCGAGCAACAGTAATGGTAGTTCGTGACGATAGCAAATACTGGAATTCATTTTCATATATGACGATGCA
TATTATTGCGTTGTTTCGTTACCTATACTAA

Upstream 100 bases:

>100_bases
GTCTATATGTAGATAATATCAAATCAATACACAGTATCTGATTGCCGTTTGAACTCTCTAAGTATTGACGTTAATAGTAT
CGAATGAAGGACATTCTAAG

Downstream 100 bases:

>100_bases
TGAAAGATATACCTTATGTTTAACATAAAAGCACCAATGATAAGAAGTGCACTATTTTTTACCCTATCGATTGTTATCAC
AGATATGTTGCATTTAGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNLTLHNLSKPLTLAAIVVLVISAVSMILSDLYSPFTTDSYVISDISRISTDIDGVVEHIYVRNGQFVKKGDPLFKIKTD
ELQSKYDTAYANLIILEQNFKKIELEMGLIESEIKQKTEIASNKKLHYIRMKTLLRNKAINQQQYDDAYTAYVDEIREIE
QLKIKLQINHVKLGSEQGGNGGLMLGKAILEKARKNINKATIHAPFDGVITNMQLVKGNFVSKSSPQIVITSQSQRQLVA
DFNEKGLDLLPNADCLVVFDAIPGRIFKTQVTSIDQAITVTGVGDQKLGETAKVAQGDRWVRKSQYVRSTLNMPDVDSSL
ISGSRATVMVVRDDSKYWNSFSYMTMHIIALFRYLY

Sequences:

>Translated_356_residues
MNLTLHNLSKPLTLAAIVVLVISAVSMILSDLYSPFTTDSYVISDISRISTDIDGVVEHIYVRNGQFVKKGDPLFKIKTD
ELQSKYDTAYANLIILEQNFKKIELEMGLIESEIKQKTEIASNKKLHYIRMKTLLRNKAINQQQYDDAYTAYVDEIREIE
QLKIKLQINHVKLGSEQGGNGGLMLGKAILEKARKNINKATIHAPFDGVITNMQLVKGNFVSKSSPQIVITSQSQRQLVA
DFNEKGLDLLPNADCLVVFDAIPGRIFKTQVTSIDQAITVTGVGDQKLGETAKVAQGDRWVRKSQYVRSTLNMPDVDSSL
ISGSRATVMVVRDDSKYWNSFSYMTMHIIALFRYLY
>Mature_356_residues
MNLTLHNLSKPLTLAAIVVLVISAVSMILSDLYSPFTTDSYVISDISRISTDIDGVVEHIYVRNGQFVKKGDPLFKIKTD
ELQSKYDTAYANLIILEQNFKKIELEMGLIESEIKQKTEIASNKKLHYIRMKTLLRNKAINQQQYDDAYTAYVDEIREIE
QLKIKLQINHVKLGSEQGGNGGLMLGKAILEKARKNINKATIHAPFDGVITNMQLVKGNFVSKSSPQIVITSQSQRQLVA
DFNEKGLDLLPNADCLVVFDAIPGRIFKTQVTSIDQAITVTGVGDQKLGETAKVAQGDRWVRKSQYVRSTLNMPDVDSSL
ISGSRATVMVVRDDSKYWNSFSYMTMHIIALFRYLY

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=336, Percent_Identity=24.1071428571429, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790012, Length=318, Percent_Identity=24.8427672955975, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790519, Length=313, Percent_Identity=23.0031948881789, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 40022; Mature: 40022

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTLHNLSKPLTLAAIVVLVISAVSMILSDLYSPFTTDSYVISDISRISTDIDGVVEHI
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
YVRNGQFVKKGDPLFKIKTDELQSKYDTAYANLIILEQNFKKIELEMGLIESEIKQKTEI
HCCCCEEEECCCCEEEEEHHHHHHHHHHHHEEEEEEECCCEEEEHHHHHHHHHHHHHHHH
ASNKKLHYIRMKTLLRNKAINQQQYDDAYTAYVDEIREIEQLKIKLQINHVKLGSEQGGN
HCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCC
GGLMLGKAILEKARKNINKATIHAPFDGVITNMQLVKGNFVSKSSPQIVITSQSQRQLVA
CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCEEEEECCCCCCCCCEEEEECCCHHHHHH
DFNEKGLDLLPNADCLVVFDAIPGRIFKTQVTSIDQAITVTGVGDQKLGETAKVAQGDRW
HCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHCCCEEEEEECCCHHHCCHHHHHCCHHH
VRKSQYVRSTLNMPDVDSSLISGSRATVMVVRDDSKYWNSFSYMTMHIIALFRYLY
HHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNLTLHNLSKPLTLAAIVVLVISAVSMILSDLYSPFTTDSYVISDISRISTDIDGVVEHI
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
YVRNGQFVKKGDPLFKIKTDELQSKYDTAYANLIILEQNFKKIELEMGLIESEIKQKTEI
HCCCCEEEECCCCEEEEEHHHHHHHHHHHHEEEEEEECCCEEEEHHHHHHHHHHHHHHHH
ASNKKLHYIRMKTLLRNKAINQQQYDDAYTAYVDEIREIEQLKIKLQINHVKLGSEQGGN
HCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCC
GGLMLGKAILEKARKNINKATIHAPFDGVITNMQLVKGNFVSKSSPQIVITSQSQRQLVA
CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCEEEEECCCCCCCCCEEEEECCCHHHHHH
DFNEKGLDLLPNADCLVVFDAIPGRIFKTQVTSIDQAITVTGVGDQKLGETAKVAQGDRW
HCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHCCCEEEEEECCCHHHCCHHHHHCCHHH
VRKSQYVRSTLNMPDVDSSLISGSRATVMVVRDDSKYWNSFSYMTMHIIALFRYLY
HHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]