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The map label for this gene is 156978083

Identifier: 156978083

GI number: 156978083

Start: 1989279

End: 1989668

Strand: Reverse

Name: 156978083

Synonym: VIBHAR_06887

Alternate gene names: NA

Gene position: 1989668-1989279 (Counterclockwise)

Preceding gene: 156978084

Following gene: 156978082

Centisome position: 90.27

GC content: 47.18

Gene sequence:

>390_bases
ATGATTTGCCATTCTATTAGTGAAGGGGAGGTTGAGGCTTGCGCTAGCGCAGGCCGTTCTCGCCCGAAAGTCGCGATTTT
TGGCGCGGGAATTTCAGGCTTAGCCGTCGCGCATAATTGTATAAAGCAAGGCTTTGATGTTGCCGTTTACGACAAGGAGC
TCTACACCGGAGGCAAGCGCATTGGTACGGTAGATGATGGCGGTGTGGTACATGAGCTCACACATCGACAGTTCTTCGCT
AAAAACTACAACCTGATTAACTTTCTTAAAGAAATCCCTTCAGAGTCAGGGAGTTGTTTAGATTCACTCTACCCTCAAAA
TGTTGTTCAATTCTCTTGGGCTCTAAGTAAGAAACGATCCCGTTTCAGCGTAGCTATTTCACTCGCCTAG

Upstream 100 bases:

>100_bases
TGGACATCAGTGGCGTGCTTGAGCAACTTCCGAATCACGACCTATATCGTGTAGAAATCGCGAATCATGTGAATTTTCAC
CGATAGTTCGAGGTGAGAAG

Downstream 100 bases:

>100_bases
AAAAGTTGTGGGATGATGCGAAATCAGCTTATTCGATGCTCTATTCTCAAGTGCCCGTGGAGGACACGCTTTGGTTTAAG
CAACGGCTACAAGCTCCTTA

Product: protoporphyrinogen

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MICHSISEGEVEACASAGRSRPKVAIFGAGISGLAVAHNCIKQGFDVAVYDKELYTGGKRIGTVDDGGVVHELTHRQFFA
KNYNLINFLKEIPSESGSCLDSLYPQNVVQFSWALSKKRSRFSVAISLA

Sequences:

>Translated_129_residues
MICHSISEGEVEACASAGRSRPKVAIFGAGISGLAVAHNCIKQGFDVAVYDKELYTGGKRIGTVDDGGVVHELTHRQFFA
KNYNLINFLKEIPSESGSCLDSLYPQNVVQFSWALSKKRSRFSVAISLA
>Mature_129_residues
MICHSISEGEVEACASAGRSRPKVAIFGAGISGLAVAHNCIKQGFDVAVYDKELYTGGKRIGTVDDGGVVHELTHRQFFA
KNYNLINFLKEIPSESGSCLDSLYPQNVVQFSWALSKKRSRFSVAISLA

Specific function: Unknown

COG id: COG1232

COG function: function code H; Protoporphyrinogen oxidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13983; Mature: 13983

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICHSISEGEVEACASAGRSRPKVAIFGAGISGLAVAHNCIKQGFDVAVYDKELYTGGKR
CCCCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECHHHHCCCCE
IGTVDDGGVVHELTHRQFFAKNYNLINFLKEIPSESGSCLDSLYPQNVVQFSWALSKKRS
ECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHCCCC
RFSVAISLA
EEEEEEEEC
>Mature Secondary Structure
MICHSISEGEVEACASAGRSRPKVAIFGAGISGLAVAHNCIKQGFDVAVYDKELYTGGKR
CCCCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECHHHHCCCCE
IGTVDDGGVVHELTHRQFFAKNYNLINFLKEIPSESGSCLDSLYPQNVVQFSWALSKKRS
ECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHCCCC
RFSVAISLA
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA