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The map label for this gene is cdaR [H]

Identifier: 156978060

GI number: 156978060

Start: 1973322

End: 1974452

Strand: Reverse

Name: cdaR [H]

Synonym: VIBHAR_06864

Alternate gene names: 156978060

Gene position: 1974452-1973322 (Counterclockwise)

Preceding gene: 156978063

Following gene: 156978059

Centisome position: 89.58

GC content: 48.19

Gene sequence:

>1131_bases
ATGGTGATTCTCGATCACACACTCGCGCAGCAAATTGTCGATCGCACCATGTCGATCATTGGTCATAACATCAATGTAAT
GAACGCGGCAGGGACCATTATTGGTAGCGGCGATGCTGAGCGCATTGGTCAAAAGCATGATGGTGCAGTGCTGGCGCTGA
ATCATGGTGACTCGCTAGAGTTGGATGAGCAAAGTTGCCAATCATTGCAAGGCGTGAAACCGGGCATCAATATGCTGCTG
CACTTTAAAGGTGAAGTGGTGGGCGTGGTGGGTGTCACTGGCAACCCTGAACACATCCGAGCGTTCGCTCAGTTAGTGAA
GATGACAGCAGAACTGACGATTGAACAAGCTTCGCTGGTGGAGCAATTGCAATGGGATCGTCGTCATCAAGAAGAGTTTG
TCTCAGCATGGTTGAACCAACAACTTAGTGATTCCGAGTTGCACGATCGGGCGCAGCGTCTTTCCATCGATTTAGCAACA
CCACGAATTGCTGTCGTAATTGAGCTTAAAGCAGAGAGTGCTCCCGTTAGTTTGAACAGTGTGCGCGGCCTTGTTGACGT
GCTGTATCGCTCTGATGATAAGTCGTTGGTTGCGATCATGTCGATGAATGAAGTTGTCGTTCTAAAGCCTTTACGTTCCT
CTTCGAATAGTGACCAAAGTGTGCTGGAGAGTATTAAGCGCCGCTTAACGGCCAATCAAATTGATGATGTCCGTCTCGCG
ATTGGGCAACGTTTTGATAGCGCACTACAGCTTCCTCTTTCCTACCAAAGTGCCAAGCAGGTGCTTGCTGTCGGTCGTCG
CTCTCATCCAGAACAAACCATGCTGGGCTTCTCTGAATATCGCTTACCTGTGTTACTCGCCCCCTTAGCCGACTCTTGGC
AAGGTGAACAACTCGCTCAAGCGATGGCGACTTTGGTTTCGGCAGACAAATCTGGACAGTTGGTAAAAACTTTAGAGGCG
TATTTTCAAGCCAATGGTAATGCCAATGATTGTGCTAAGGCTCTGTATATTCATAGAAATACCCTGAGGTATCGTCTGGA
TAGAATCAGTGAAGTGACGGGCATTTCGACGCAAGATTTTACGGGATTAACCGAGCTGTATATCGCAAGCCAGTTAAGAA
AGCTAAATTAG

Upstream 100 bases:

>100_bases
GTGATGTTTCACTTTGGCGTTGATTTCAGTTCAATATCATGGCGATAGAAGACAAAGTGTGATTTATTGACGCCTCAATC
GTGGAATTTTAGGAACGGAA

Downstream 100 bases:

>100_bases
CTAATTGTGCAAGTGCACAAAATAATTCAAGCATAGTCAGTATTGTTTGGATGTTTGACTAAAGAATATGCCAAGTTTTT
AAGTGAGAATGGCCACATTG

Product: transcriptional regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MVILDHTLAQQIVDRTMSIIGHNINVMNAAGTIIGSGDAERIGQKHDGAVLALNHGDSLELDEQSCQSLQGVKPGINMLL
HFKGEVVGVVGVTGNPEHIRAFAQLVKMTAELTIEQASLVEQLQWDRRHQEEFVSAWLNQQLSDSELHDRAQRLSIDLAT
PRIAVVIELKAESAPVSLNSVRGLVDVLYRSDDKSLVAIMSMNEVVVLKPLRSSSNSDQSVLESIKRRLTANQIDDVRLA
IGQRFDSALQLPLSYQSAKQVLAVGRRSHPEQTMLGFSEYRLPVLLAPLADSWQGEQLAQAMATLVSADKSGQLVKTLEA
YFQANGNANDCAKALYIHRNTLRYRLDRISEVTGISTQDFTGLTELYIASQLRKLN

Sequences:

>Translated_376_residues
MVILDHTLAQQIVDRTMSIIGHNINVMNAAGTIIGSGDAERIGQKHDGAVLALNHGDSLELDEQSCQSLQGVKPGINMLL
HFKGEVVGVVGVTGNPEHIRAFAQLVKMTAELTIEQASLVEQLQWDRRHQEEFVSAWLNQQLSDSELHDRAQRLSIDLAT
PRIAVVIELKAESAPVSLNSVRGLVDVLYRSDDKSLVAIMSMNEVVVLKPLRSSSNSDQSVLESIKRRLTANQIDDVRLA
IGQRFDSALQLPLSYQSAKQVLAVGRRSHPEQTMLGFSEYRLPVLLAPLADSWQGEQLAQAMATLVSADKSGQLVKTLEA
YFQANGNANDCAKALYIHRNTLRYRLDRISEVTGISTQDFTGLTELYIASQLRKLN
>Mature_376_residues
MVILDHTLAQQIVDRTMSIIGHNINVMNAAGTIIGSGDAERIGQKHDGAVLALNHGDSLELDEQSCQSLQGVKPGINMLL
HFKGEVVGVVGVTGNPEHIRAFAQLVKMTAELTIEQASLVEQLQWDRRHQEEFVSAWLNQQLSDSELHDRAQRLSIDLAT
PRIAVVIELKAESAPVSLNSVRGLVDVLYRSDDKSLVAIMSMNEVVVLKPLRSSSNSDQSVLESIKRRLTANQIDDVRLA
IGQRFDSALQLPLSYQSAKQVLAVGRRSHPEQTMLGFSEYRLPVLLAPLADSWQGEQLAQAMATLVSADKSGQLVKTLEA
YFQANGNANDCAKALYIHRNTLRYRLDRISEVTGISTQDFTGLTELYIASQLRKLN

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=40.1595744680851, Blast_Score=267, Evalue=7e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 41455; Mature: 41455

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILDHTLAQQIVDRTMSIIGHNINVMNAAGTIIGSGDAERIGQKHDGAVLALNHGDSLE
CEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCHHHCCCCCCCEEEEECCCCCCC
LDEQSCQSLQGVKPGINMLLHFKGEVVGVVGVTGNPEHIRAFAQLVKMTAELTIEQASLV
CCHHHHHHHCCCCCCHHEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EQLQWDRRHQEEFVSAWLNQQLSDSELHDRAQRLSIDLATPRIAVVIELKAESAPVSLNS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECCCEEEEEEEEECCCCCCCHHH
VRGLVDVLYRSDDKSLVAIMSMNEVVVLKPLRSSSNSDQSVLESIKRRLTANQIDDVRLA
HHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
IGQRFDSALQLPLSYQSAKQVLAVGRRSHPEQTMLGFSEYRLPVLLAPLADSWQGEQLAQ
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCHHHCCCCEEEECCCCCCCHHHHHH
AMATLVSADKSGQLVKTLEAYFQANGNANDCAKALYIHRNTLRYRLDRISEVTGISTQDF
HHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TGLTELYIASQLRKLN
CHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVILDHTLAQQIVDRTMSIIGHNINVMNAAGTIIGSGDAERIGQKHDGAVLALNHGDSLE
CEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCHHHCCCCCCCEEEEECCCCCCC
LDEQSCQSLQGVKPGINMLLHFKGEVVGVVGVTGNPEHIRAFAQLVKMTAELTIEQASLV
CCHHHHHHHCCCCCCHHEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EQLQWDRRHQEEFVSAWLNQQLSDSELHDRAQRLSIDLATPRIAVVIELKAESAPVSLNS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECCCEEEEEEEEECCCCCCCHHH
VRGLVDVLYRSDDKSLVAIMSMNEVVVLKPLRSSSNSDQSVLESIKRRLTANQIDDVRLA
HHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
IGQRFDSALQLPLSYQSAKQVLAVGRRSHPEQTMLGFSEYRLPVLLAPLADSWQGEQLAQ
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCHHHCCCCEEEECCCCCCCHHHHHH
AMATLVSADKSGQLVKTLEAYFQANGNANDCAKALYIHRNTLRYRLDRISEVTGISTQDF
HHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TGLTELYIASQLRKLN
CHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]