Click here to switch to the map view.

The map label for this gene is 156977907

Identifier: 156977907

GI number: 156977907

Start: 1835230

End: 1835838

Strand: Direct

Name: 156977907

Synonym: VIBHAR_06700

Alternate gene names: NA

Gene position: 1835230-1835838 (Clockwise)

Preceding gene: 156977905

Following gene: 156977908

Centisome position: 83.27

GC content: 44.33

Gene sequence:

>609_bases
ATGCAAGTACAAGGCGATTTATTCAAAAGCTCATTTTGGCAAGAAGTAGCACAAGGGAAGATCTACTATGATCCTCACTT
TCTCGCTCACTTAGATGCTGATCGCTGTTTTTCGCAGCTTCGCGCAAACTTACCTTGGCAACAAGAAAGCATCATGATGT
TTGGACGATCGGTATTACAGCCTCGACTACAAGCGTGGCATGGTGACGCTGCTTACACTTATTCAGGACTAACCATGACT
CCTCACTCTTGGACAGCGGAACTGATTGAACTGAAAACACGCAGTGAAGCCATTGCTGAGGTGAAATTTAACTCTGTCTT
AGCGAATCTCTATCGTCACGGCCAAGACTCTATGGGATGGCATCAAGACAATGAGCCTGAGCTAGGAAGAAATCCTGTAA
TCGCTTCTATCAACTTGGGGGAAACTCGCCGATTTGTTCTAAGGAATTTACATTGTAAAACCCAATTAGAATATGAGCTT
AGCCATGGTTCTCTGCTCATTATGGCCGGAGAGTTACAACATCACTGGAAGCATGCCGTTCCTAAAACAGCAAAACCAAA
AGGCGAGCGTATTAATCTGACTTTCCGCCATATCGTGACCAACTATTGA

Upstream 100 bases:

>100_bases
TAATTATTGTTAAAATAATTATTTACCTTAAGGATAACTAATAGCTATCGTAAAGGTAATAAATATCTAAAAATCTTATC
TATCAAAAAGGCAAAGTGAG

Downstream 100 bases:

>100_bases
CTGAGTCATTACATATCAAAATTGCATTAATGCTAGGCTTGAATCTTGGCTCCCAATCGGAATGTGTTTATGCGTATCAG
ACCTATCAGCTTAGCCGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: 2OG-Fe(II) Oxygenase; DNA-N1-Methyladenine Dioxygenase; DNA Repair System Specific For Alkylated DNA; 2OG-Fe(II) Oxygenase Superfamily Protein; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Alkylated DNA Repair Protein-Like Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; Alkylated DNA Repair Protein AlkB; CRISPR-Associated Family Protein; DNA Repair System Specific For Alkylated DNA Protein; 2OG-Fe(II) Oxygenase Family Protein; DNA Repair System Protein

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MQVQGDLFKSSFWQEVAQGKIYYDPHFLAHLDADRCFSQLRANLPWQQESIMMFGRSVLQPRLQAWHGDAAYTYSGLTMT
PHSWTAELIELKTRSEAIAEVKFNSVLANLYRHGQDSMGWHQDNEPELGRNPVIASINLGETRRFVLRNLHCKTQLEYEL
SHGSLLIMAGELQHHWKHAVPKTAKPKGERINLTFRHIVTNY

Sequences:

>Translated_202_residues
MQVQGDLFKSSFWQEVAQGKIYYDPHFLAHLDADRCFSQLRANLPWQQESIMMFGRSVLQPRLQAWHGDAAYTYSGLTMT
PHSWTAELIELKTRSEAIAEVKFNSVLANLYRHGQDSMGWHQDNEPELGRNPVIASINLGETRRFVLRNLHCKTQLEYEL
SHGSLLIMAGELQHHWKHAVPKTAKPKGERINLTFRHIVTNY
>Mature_202_residues
MQVQGDLFKSSFWQEVAQGKIYYDPHFLAHLDADRCFSQLRANLPWQQESIMMFGRSVLQPRLQAWHGDAAYTYSGLTMT
PHSWTAELIELKTRSEAIAEVKFNSVLANLYRHGQDSMGWHQDNEPELGRNPVIASINLGETRRFVLRNLHCKTQLEYEL
SHGSLLIMAGELQHHWKHAVPKTAKPKGERINLTFRHIVTNY

Specific function: Unknown

COG id: COG3145

COG function: function code L; Alkylated DNA repair protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI21040275, Length=187, Percent_Identity=40.6417112299465, Blast_Score=140, Evalue=7e-34,
Organism=Homo sapiens, GI224451107, Length=186, Percent_Identity=33.8709677419355, Blast_Score=106, Evalue=1e-23,
Organism=Homo sapiens, GI48717226, Length=186, Percent_Identity=33.8709677419355, Blast_Score=106, Evalue=1e-23,
Organism=Homo sapiens, GI224451103, Length=186, Percent_Identity=33.8709677419355, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23370; Mature: 23370

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVQGDLFKSSFWQEVAQGKIYYDPHFLAHLDADRCFSQLRANLPWQQESIMMFGRSVLQ
CCCCHHHHHHHHHHHHHCCEEEECCHHEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
PRLQAWHGDAAYTYSGLTMTPHSWTAELIELKTRSEAIAEVKFNSVLANLYRHGQDSMGW
HHHHHHCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HQDNEPELGRNPVIASINLGETRRFVLRNLHCKTQLEYELSHGSLLIMAGELQHHWKHAV
CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEECCCEEEEEECHHHHHHHHCC
PKTAKPKGERINLTFRHIVTNY
CCCCCCCCCEEEEEHHHHHCCC
>Mature Secondary Structure
MQVQGDLFKSSFWQEVAQGKIYYDPHFLAHLDADRCFSQLRANLPWQQESIMMFGRSVLQ
CCCCHHHHHHHHHHHHHCCEEEECCHHEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
PRLQAWHGDAAYTYSGLTMTPHSWTAELIELKTRSEAIAEVKFNSVLANLYRHGQDSMGW
HHHHHHCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HQDNEPELGRNPVIASINLGETRRFVLRNLHCKTQLEYELSHGSLLIMAGELQHHWKHAV
CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEECCCEEEEEECHHHHHHHHCC
PKTAKPKGERINLTFRHIVTNY
CCCCCCCCCEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA