| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156977879
Identifier: 156977879
GI number: 156977879
Start: 1810039
End: 1811310
Strand: Direct
Name: 156977879
Synonym: VIBHAR_06671
Alternate gene names: NA
Gene position: 1810039-1811310 (Clockwise)
Preceding gene: 156977877
Following gene: 156977881
Centisome position: 82.12
GC content: 46.54
Gene sequence:
>1272_bases ATGCAATCTCACAATAGCTTCTCTATTAATCTTAACCAGCAAAAGTCCATAGCGAAAAAGCGTCTAAAAGCGATCCGCCA AAATGATGCCAACGCACTTGATCAGGTTAAGCAATTTCATTCCCAACCCGAAACCCTCACGCCAGAGTCTATCCAGCTTG CAGATGTTCAACACGCCCTAGCTAGAGAGCTTGGCTTACCCAGTTGGAACAAGTTAAAAGCTCATGTAGAAGAGCTAGAA AGTCACAAGCTCGCTATCAACAACCAAGCAAATCCACTTGATACCGAACTAACAACACTGCACGTCCGCTGTGGGCACGA TATTCAACAGCAACTAAAGACATGTGGGTTCGAGGGTGACTTCTTACCCATGATTGATCCATTGTGCGTCGGTCCCATTC CGAGCAATCAAAAAGGATTTGTCGCTATTCGAGCACAATACGTTGTAGACACATTACTGCCTGTTATGGGGAGAAAAGAC TCGGTGCAAGAGGTAGCGCAGTTTGAGCAAGGCAACATCCATACCCTGCTCGACCAGCAATACGAACGCATCGTGTTTTG GGTTGAACATGATGCCTACGATCAGTTCATGCTACTTCGAGGGCTATCTCTGCTAGATAACACCGAAGGTAAAGTCATTG AGATCATCGAGTTCAACCAGTTTCCGGGAACCGAGCGGTTTATTGGCTTTGGGCAACTTCCTGCAGAGGCGATTCGATCG TGTTGGCAGTATCGAAAGCCTGTGACGGCCAAGTTGTTCAGCCAAGCTAAACTCTGCTGGAATGCCTTACTCTCTCCAAC ACCGCAGCCACTCGTTAACTTGCTAGAGCATCATAAACTGGATTGTTTACCGAACATCAAAGCTGTCATCACTCGGCACC TACAAGAACTGCCACACTCAGAGTCAGGGTTGAGCTTCACACAACATTTGGCTTTGCAGATATTGAACGAGCAAAACGAA CCAATCAAAGTGAAAGATTGGTTTCAGAAGAGCCAACAACGAGAACCACTTCCTACTCTCGGTGACGTGATGTTTTATGC TTTGATGTTGCCACTGGCACAAGCAGAGAATCCCCTGGTCACTGTTGATTCATTGGATAAGAATTGGTGGGAGCAAGAAG TCAGTATAAGCTCGCGAGGCAAAACTTGTTTGATTGGGAAAGGTGCTTTCATTCAGGACTACTGGAGCGGAGGGATCCAC AACCACGCACAAAACCGCTGGATATGGAATCACACCCAGCTTTCTACCTTACGCCACTTATCTATTAATTAG
Upstream 100 bases:
>100_bases GCAACTCAACTTCCCTGCTTTCGTTAGCAGGAACAATCTGTTTTTACCTTCTTTTAAACTTCTAATAAGGCGAGTGTGGA AGAGATAAGAAAGGTGAAAA
Downstream 100 bases:
>100_bases ATGAGAGTGATGACAAGCTAGTAACGGTAGCCATCTAGAAACAGCGTAAGGATATCTTCGACGATTTTCTTACGCTGCTC GACGCTTGGCACCGCTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MQSHNSFSINLNQQKSIAKKRLKAIRQNDANALDQVKQFHSQPETLTPESIQLADVQHALARELGLPSWNKLKAHVEELE SHKLAINNQANPLDTELTTLHVRCGHDIQQQLKTCGFEGDFLPMIDPLCVGPIPSNQKGFVAIRAQYVVDTLLPVMGRKD SVQEVAQFEQGNIHTLLDQQYERIVFWVEHDAYDQFMLLRGLSLLDNTEGKVIEIIEFNQFPGTERFIGFGQLPAEAIRS CWQYRKPVTAKLFSQAKLCWNALLSPTPQPLVNLLEHHKLDCLPNIKAVITRHLQELPHSESGLSFTQHLALQILNEQNE PIKVKDWFQKSQQREPLPTLGDVMFYALMLPLAQAENPLVTVDSLDKNWWEQEVSISSRGKTCLIGKGAFIQDYWSGGIH NHAQNRWIWNHTQLSTLRHLSIN
Sequences:
>Translated_423_residues MQSHNSFSINLNQQKSIAKKRLKAIRQNDANALDQVKQFHSQPETLTPESIQLADVQHALARELGLPSWNKLKAHVEELE SHKLAINNQANPLDTELTTLHVRCGHDIQQQLKTCGFEGDFLPMIDPLCVGPIPSNQKGFVAIRAQYVVDTLLPVMGRKD SVQEVAQFEQGNIHTLLDQQYERIVFWVEHDAYDQFMLLRGLSLLDNTEGKVIEIIEFNQFPGTERFIGFGQLPAEAIRS CWQYRKPVTAKLFSQAKLCWNALLSPTPQPLVNLLEHHKLDCLPNIKAVITRHLQELPHSESGLSFTQHLALQILNEQNE PIKVKDWFQKSQQREPLPTLGDVMFYALMLPLAQAENPLVTVDSLDKNWWEQEVSISSRGKTCLIGKGAFIQDYWSGGIH NHAQNRWIWNHTQLSTLRHLSIN >Mature_423_residues MQSHNSFSINLNQQKSIAKKRLKAIRQNDANALDQVKQFHSQPETLTPESIQLADVQHALARELGLPSWNKLKAHVEELE SHKLAINNQANPLDTELTTLHVRCGHDIQQQLKTCGFEGDFLPMIDPLCVGPIPSNQKGFVAIRAQYVVDTLLPVMGRKD SVQEVAQFEQGNIHTLLDQQYERIVFWVEHDAYDQFMLLRGLSLLDNTEGKVIEIIEFNQFPGTERFIGFGQLPAEAIRS CWQYRKPVTAKLFSQAKLCWNALLSPTPQPLVNLLEHHKLDCLPNIKAVITRHLQELPHSESGLSFTQHLALQILNEQNE PIKVKDWFQKSQQREPLPTLGDVMFYALMLPLAQAENPLVTVDSLDKNWWEQEVSISSRGKTCLIGKGAFIQDYWSGGIH NHAQNRWIWNHTQLSTLRHLSIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48282; Mature: 48282
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSHNSFSINLNQQKSIAKKRLKAIRQNDANALDQVKQFHSQPETLTPESIQLADVQHAL CCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH ARELGLPSWNKLKAHVEELESHKLAINNQANPLDTELTTLHVRCGHDIQQQLKTCGFEGD HHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCC FLPMIDPLCVGPIPSNQKGFVAIRAQYVVDTLLPVMGRKDSVQEVAQFEQGNIHTLLDQQ CHHCCCHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH YERIVFWVEHDAYDQFMLLRGLSLLDNTEGKVIEIIEFNQFPGTERFIGFGQLPAEAIRS HHHEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCCCCHHHHHH CWQYRKPVTAKLFSQAKLCWNALLSPTPQPLVNLLEHHKLDCLPNIKAVITRHLQELPHS HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC ESGLSFTQHLALQILNEQNEPIKVKDWFQKSQQREPLPTLGDVMFYALMLPLAQAENPLV CCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEE TVDSLDKNWWEQEVSISSRGKTCLIGKGAFIQDYWSGGIHNHAQNRWIWNHTQLSTLRHL EEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCCEEECHHHHHHHHHC SIN CCC >Mature Secondary Structure MQSHNSFSINLNQQKSIAKKRLKAIRQNDANALDQVKQFHSQPETLTPESIQLADVQHAL CCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH ARELGLPSWNKLKAHVEELESHKLAINNQANPLDTELTTLHVRCGHDIQQQLKTCGFEGD HHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCC FLPMIDPLCVGPIPSNQKGFVAIRAQYVVDTLLPVMGRKDSVQEVAQFEQGNIHTLLDQQ CHHCCCHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH YERIVFWVEHDAYDQFMLLRGLSLLDNTEGKVIEIIEFNQFPGTERFIGFGQLPAEAIRS HHHEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCCCCHHHHHH CWQYRKPVTAKLFSQAKLCWNALLSPTPQPLVNLLEHHKLDCLPNIKAVITRHLQELPHS HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC ESGLSFTQHLALQILNEQNEPIKVKDWFQKSQQREPLPTLGDVMFYALMLPLAQAENPLV CCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEE TVDSLDKNWWEQEVSISSRGKTCLIGKGAFIQDYWSGGIHNHAQNRWIWNHTQLSTLRHL EEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCCEEECHHHHHHHHHC SIN CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA