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The map label for this gene is yddE [C]

Identifier: 156977830

GI number: 156977830

Start: 1764443

End: 1765243

Strand: Reverse

Name: yddE [C]

Synonym: VIBHAR_06618

Alternate gene names: 156977830

Gene position: 1765243-1764443 (Counterclockwise)

Preceding gene: 156977834

Following gene: 156977829

Centisome position: 80.09

GC content: 47.69

Gene sequence:

>801_bases
ATGGATCTCGATATCTACCAAGTGGACTCTTTCACCACCGAACCTTTCAAAGGAAACCCTGCAGGAGTCTGCCTTTCACA
AGAACCGTTACCAGAAGCATTGATGTTCTCTATCGCTGAAGAAATGGCGGTATCAGAAACCGCTTTTCTCTGTTTGAAAG
ACATGCGACTGCGTTGGTTCACACCTAAAGTAGAAGTGGCGCTATGTGGTCATGGCACATTAGCCACAGCGCAAATCTTA
AAAGAACAAGGATTAGCGAAGGTTGGCGATACCATTGCCTTCCAAACTCTCTCTGGTGAGCTTCATGCAAAAGTAAACGA
GTCGACAATTGAGCTCGATTTTCCTTCGACTCAGCTTGAAATGGATGTTGAACAAGACGCTACATTGCTAGCGGCGCTTG
GATTAAAAGCGGAGCAAGTGGTTTCTTACGCTCAGTTTGACAGCAAAGGCTTTATTGAAGTCGACAGTGAACAAACCGTG
TTGGAACTCGAGCCTAACTTTGATGCATTAAAGAACATTCAAGGGCGCGGCGTGGTGGTCACTGCTCAATCGAACTCCCC
AGGCCTCGACTTTATCTCGCGCTATTTCGCTCCTTGGGTAGGCGTGAACGAAGATCCTGTTACAGGCTCAGCGCATTGCG
CACTGACTCAGTTTTGGGCGCAGAAGCTCGGTCAAAATCAGTTTAGAGCTTATCAAGCCTCAGCGCGTGGCGGCCACTTA
CAAACCGAGTTGTTAGAAAACGGACGCATTAAACTGATTGGCTCCGCAAAGACGGTAATCAGCGGCAAACTCAAGGTATA
A

Upstream 100 bases:

>100_bases
TGTGTTTTGCAAGAACAATCAGGGCATGCATTGTCGCTTTACCATGAAACCGATAAGCTGTTTGGCATCTTGCCAAAATA
GCAGTATTAGGAAACGCATC

Downstream 100 bases:

>100_bases
CGCGATGAAACAATCCATTATCCATATTGCTTTGGTCGTAAAAGACTACGATGAAGCGATTGATTTCTATGTGAATAAGC
TGAAGTTTGAGCTGATGGAA

Product: epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDLDIYQVDSFTTEPFKGNPAGVCLSQEPLPEALMFSIAEEMAVSETAFLCLKDMRLRWFTPKVEVALCGHGTLATAQIL
KEQGLAKVGDTIAFQTLSGELHAKVNESTIELDFPSTQLEMDVEQDATLLAALGLKAEQVVSYAQFDSKGFIEVDSEQTV
LELEPNFDALKNIQGRGVVVTAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWAQKLGQNQFRAYQASARGGHL
QTELLENGRIKLIGSAKTVISGKLKV

Sequences:

>Translated_266_residues
MDLDIYQVDSFTTEPFKGNPAGVCLSQEPLPEALMFSIAEEMAVSETAFLCLKDMRLRWFTPKVEVALCGHGTLATAQIL
KEQGLAKVGDTIAFQTLSGELHAKVNESTIELDFPSTQLEMDVEQDATLLAALGLKAEQVVSYAQFDSKGFIEVDSEQTV
LELEPNFDALKNIQGRGVVVTAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWAQKLGQNQFRAYQASARGGHL
QTELLENGRIKLIGSAKTVISGKLKV
>Mature_266_residues
MDLDIYQVDSFTTEPFKGNPAGVCLSQEPLPEALMFSIAEEMAVSETAFLCLKDMRLRWFTPKVEVALCGHGTLATAQIL
KEQGLAKVGDTIAFQTLSGELHAKVNESTIELDFPSTQLEMDVEQDATLLAALGLKAEQVVSYAQFDSKGFIEVDSEQTV
LELEPNFDALKNIQGRGVVVTAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWAQKLGQNQFRAYQASARGGHL
QTELLENGRIKLIGSAKTVISGKLKV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=290, Percent_Identity=38.9655172413793, Blast_Score=181, Evalue=7e-46,
Organism=Homo sapiens, GI74316009, Length=259, Percent_Identity=38.2239382239382, Blast_Score=153, Evalue=1e-37,
Organism=Escherichia coli, GI1787737, Length=233, Percent_Identity=33.0472103004292, Blast_Score=103, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17542160, Length=309, Percent_Identity=34.9514563106796, Blast_Score=156, Evalue=8e-39,
Organism=Caenorhabditis elegans, GI17542154, Length=309, Percent_Identity=34.9514563106796, Blast_Score=156, Evalue=8e-39,
Organism=Caenorhabditis elegans, GI17542158, Length=308, Percent_Identity=31.4935064935065, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17542152, Length=308, Percent_Identity=31.4935064935065, Blast_Score=128, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6321818, Length=287, Percent_Identity=27.1777003484321, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29003; Mature: 29003

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDIYQVDSFTTEPFKGNPAGVCLSQEPLPEALMFSIAEEMAVSETAFLCLKDMRLRWF
CCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
TPKVEVALCGHGTLATAQILKEQGLAKVGDTIAFQTLSGELHAKVNESTIELDFPSTQLE
CCCEEEEEECCCCHHHHHHHHHCCHHHHCCEEEEEEECCEEEEEECCCEEEEECCCCEEE
MDVEQDATLLAALGLKAEQVVSYAQFDSKGFIEVDSEQTVLELEPNFDALKNIQGRGVVV
EECCCCHHHHHHHCCCHHHHHHHHHCCCCCCEEECCCCEEEEECCCHHHHHCCCCCEEEE
TAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWAQKLGQNQFRAYQASARGGHL
EECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCE
QTELLENGRIKLIGSAKTVISGKLKV
EHHHHCCCCEEEEECCCEEEECEECC
>Mature Secondary Structure
MDLDIYQVDSFTTEPFKGNPAGVCLSQEPLPEALMFSIAEEMAVSETAFLCLKDMRLRWF
CCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
TPKVEVALCGHGTLATAQILKEQGLAKVGDTIAFQTLSGELHAKVNESTIELDFPSTQLE
CCCEEEEEECCCCHHHHHHHHHCCHHHHCCEEEEEEECCEEEEEECCCEEEEECCCCEEE
MDVEQDATLLAALGLKAEQVVSYAQFDSKGFIEVDSEQTVLELEPNFDALKNIQGRGVVV
EECCCCHHHHHHHCCCHHHHHHHHHCCCCCCEEECCCCEEEEECCCHHHHHCCCCCEEEE
TAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWAQKLGQNQFRAYQASARGGHL
EECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCE
QTELLENGRIKLIGSAKTVISGKLKV
EHHHHCCCCEEEEECCCEEEECEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]