| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
Click here to switch to the map view.
The map label for this gene is ppsA [H]
Identifier: 156977729
GI number: 156977729
Start: 1672296
End: 1674683
Strand: Direct
Name: ppsA [H]
Synonym: VIBHAR_06517
Alternate gene names: 156977729
Gene position: 1672296-1674683 (Clockwise)
Preceding gene: 156977727
Following gene: 156977730
Centisome position: 75.87
GC content: 48.2
Gene sequence:
>2388_bases ATGTTTCTGGAGAAAGACATGCAAAAGAACACCCTCTGGTTCAATGGACTATCCATGGATGATGTCGACAAGGTCGGCGG TAAAAATGCTTCACTTGGCGAAATGGTTTCTAACCTAGCCAATGTTGGTGTATCAGTACCAAACGGTTTTGCGACAACCT CGTATGCGTTTAACCAATTCCTTGACCACGAAGGTTTGGATGAGCGTATTCACCAACTACTTGATGAACTAGACGTTGAG GATGTAGAAGCCCTGCGTAAGACAGGTGCCACCATTCGTCAATGGGTATTAGAAGCCCCGTTCCCTGCGGATCTTGAACA AGACATCCGTGATAACTACAAAGAACTGACAGACAATCATCCTGAGATTTCTGTTGCCGTTCGCTCTTCTGCAACTGCAG AGGATCTACCGGATGCGTCATTTGCTGGTCAGCAAGAAACGTTCCTAAACGTAAAAGGCATTGATGCAGTACTAGAAGCG ACCAAGCACGTTTACGCTTCTCTGTTCAATGACCGCGCAATTTCATACCGTGTACACCAAGGCTTTAACCACCGCGGCAT TTCGCTGTCGGCAGGTATCCAACGCATGGTGCGCTCGGACAAAGCCTCTTCTGGCGTTATGTTCACCCTAGATACCGAAT CTGGCTTCGACCAAGTCGTGTTCATCACCTCTTCTTGGGGCTTGGGTGAAATGGTGGTTCAGGGTGCGGTTAACCCTGAT GAATTCTACGTTCACAAGCCAATGCTAGAAGCAGGTCAACACCCTATCGTTAAGAAGACATTTGGCTCTAAGCAGATCAA AATGATCTACTCAGACCGTCAAGAGATCGGTAAGCAAGTTGAGATCATCGACACCTCAGTAGAGGAGCGCAATGCCTTCT CTCTGAATGATGAAGAGATCAAAGAGCTCGCAAAACAGGCGATGATCATCGAAAAGCACTACAAACGTCCTATGGACATT GAGTGGGCAAAAGATGGCATCGACGGCAAGCTTTACATCGTACAGGCACGCCCAGAGACCGTATGTTCTCAAAGCGAGCA AAACGTGATTGAACGCTACGAGCTAAGCAACAAAGCTGATGTTTTGGTTGAAGGTCGTGCAATTGGTCAGCGTATCGGTA AAGGCCCAGTGCGCTTAGTCGATTCTCTAGACCAAATGTCATTGGTACAAGAAGGCGATGTACTGGTTACTGATATGACT GACCCAGACTGGGAACCAGTAATGAAGAAGGCGTCTGCGATTGTCACGAACCGTGGCGGCCGTACTTGTCACGCAGCGAT CATCGCACGTGAGCTTGGTATTCCGGCTATCGTTGGTTGTGGTGACGCCACCAGCAAACTGACTGACGGTGAGACCGTAA CAGTATCTTGTGCTGAAGGCGAAACGGGCTACGTTTACCAAGGCGAGCTGGAGTTTGAAATCAAGCGCTCAGCGGTCGAT GAGCTGCCACTGCTACCAACCAAAGTGATGATGAACGTTGGTAACCCAGATCGTGCATTCGACTTTGCTCAGATTCCAAA CGAAGGTGTGGGCCTTGCGCGTCTTGAGTTCATCATCAACAAAATGATTGGTATTCACCCGAAAGCCTTGCTGAACTTCG ATGCACAAAGCGATGAGCTAAAAGCTGAAATCACTGAGCGTATCCGTGGTTACAAAGATCCAATTGATTTCTACGTTAGC AAGCTAACCGAAGGCATCGCGACTATCGCGTCGGCATTCTGGCCAAAACGCGTGATTGTTCGTATGTCTGATTTCAAATC GAACGAGTACAGCAACTTGGTGGGCGGTAAAGGTTACGAACCGCATGAAGAGAACCCAATGCTGGGCTTCCGTGGTGCGT CTCGCTACATTTCTCCAGTGTTTGAAGACTGTTTCGAGCTAGAAACTCAAGCAATCAAACGCGTTCGTAACGAGATGGGT CTTAAGAACGTTGAAATCATGATCCCATTCGTACGTACACCAAGCGAAGCAGCTTCGGTTATCGACCTACTGGCTAAGTT CGACCTACGTCGTGGCGACCAAGGTTTGAAAGTCATCATGATGTGTGAACTACCGTCAAACGCAGTACTTGCTGAAGAGT TCTTGAAGTACTTCGATGGCTTCTCTATCGGTTCAAACGACATGACTCAGCTTACACTTGGTCTTGACCGTGACTCTGGC GATGTTGCTCACCTATTCGATGAGCGTAACCCAGCAGTGAAAGCCATGCTGCAAATGGCCATAGATGCGGCAACCAAAGC AGGCAAATATGTCGGTATCTGTGGCCAAGGTCCATCAGACCACGATGATCTTGCGGAATGGTTGATGGAACAAGGCATCA GCTCTGTTTCACTCAACCCAGATACGGTTATCGATACTTGGTTGAGACTAGGTAAAGTGAGCAAGTAA
Upstream 100 bases:
>100_bases AATGGCTGTTGTCAGCCCGAGACTGTGTCTTCGATGACATTGACCTGCAAGGATGAACCACCGCTGTTCAAGGTTGGTAT TAATCCCCTACAAAGCTGCA
Downstream 100 bases:
>100_bases AACGAGCCTTCCTAACTTGTAATACTAAGCCCTCAAGCTCCTGAGTTTGAGGGCTTTTTCTTTACCCAGCATGTCAAAGC TCTGTGAGTTCGTGACGACA
Product: phosphoenolpyruvate synthase
Products: NA
Alternate protein names: PEP synthase; Pyruvate, water dikinase [H]
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MFLEKDMQKNTLWFNGLSMDDVDKVGGKNASLGEMVSNLANVGVSVPNGFATTSYAFNQFLDHEGLDERIHQLLDELDVE DVEALRKTGATIRQWVLEAPFPADLEQDIRDNYKELTDNHPEISVAVRSSATAEDLPDASFAGQQETFLNVKGIDAVLEA TKHVYASLFNDRAISYRVHQGFNHRGISLSAGIQRMVRSDKASSGVMFTLDTESGFDQVVFITSSWGLGEMVVQGAVNPD EFYVHKPMLEAGQHPIVKKTFGSKQIKMIYSDRQEIGKQVEIIDTSVEERNAFSLNDEEIKELAKQAMIIEKHYKRPMDI EWAKDGIDGKLYIVQARPETVCSQSEQNVIERYELSNKADVLVEGRAIGQRIGKGPVRLVDSLDQMSLVQEGDVLVTDMT DPDWEPVMKKASAIVTNRGGRTCHAAIIARELGIPAIVGCGDATSKLTDGETVTVSCAEGETGYVYQGELEFEIKRSAVD ELPLLPTKVMMNVGNPDRAFDFAQIPNEGVGLARLEFIINKMIGIHPKALLNFDAQSDELKAEITERIRGYKDPIDFYVS KLTEGIATIASAFWPKRVIVRMSDFKSNEYSNLVGGKGYEPHEENPMLGFRGASRYISPVFEDCFELETQAIKRVRNEMG LKNVEIMIPFVRTPSEAASVIDLLAKFDLRRGDQGLKVIMMCELPSNAVLAEEFLKYFDGFSIGSNDMTQLTLGLDRDSG DVAHLFDERNPAVKAMLQMAIDAATKAGKYVGICGQGPSDHDDLAEWLMEQGISSVSLNPDTVIDTWLRLGKVSK
Sequences:
>Translated_795_residues MFLEKDMQKNTLWFNGLSMDDVDKVGGKNASLGEMVSNLANVGVSVPNGFATTSYAFNQFLDHEGLDERIHQLLDELDVE DVEALRKTGATIRQWVLEAPFPADLEQDIRDNYKELTDNHPEISVAVRSSATAEDLPDASFAGQQETFLNVKGIDAVLEA TKHVYASLFNDRAISYRVHQGFNHRGISLSAGIQRMVRSDKASSGVMFTLDTESGFDQVVFITSSWGLGEMVVQGAVNPD EFYVHKPMLEAGQHPIVKKTFGSKQIKMIYSDRQEIGKQVEIIDTSVEERNAFSLNDEEIKELAKQAMIIEKHYKRPMDI EWAKDGIDGKLYIVQARPETVCSQSEQNVIERYELSNKADVLVEGRAIGQRIGKGPVRLVDSLDQMSLVQEGDVLVTDMT DPDWEPVMKKASAIVTNRGGRTCHAAIIARELGIPAIVGCGDATSKLTDGETVTVSCAEGETGYVYQGELEFEIKRSAVD ELPLLPTKVMMNVGNPDRAFDFAQIPNEGVGLARLEFIINKMIGIHPKALLNFDAQSDELKAEITERIRGYKDPIDFYVS KLTEGIATIASAFWPKRVIVRMSDFKSNEYSNLVGGKGYEPHEENPMLGFRGASRYISPVFEDCFELETQAIKRVRNEMG LKNVEIMIPFVRTPSEAASVIDLLAKFDLRRGDQGLKVIMMCELPSNAVLAEEFLKYFDGFSIGSNDMTQLTLGLDRDSG DVAHLFDERNPAVKAMLQMAIDAATKAGKYVGICGQGPSDHDDLAEWLMEQGISSVSLNPDTVIDTWLRLGKVSK >Mature_795_residues MFLEKDMQKNTLWFNGLSMDDVDKVGGKNASLGEMVSNLANVGVSVPNGFATTSYAFNQFLDHEGLDERIHQLLDELDVE DVEALRKTGATIRQWVLEAPFPADLEQDIRDNYKELTDNHPEISVAVRSSATAEDLPDASFAGQQETFLNVKGIDAVLEA TKHVYASLFNDRAISYRVHQGFNHRGISLSAGIQRMVRSDKASSGVMFTLDTESGFDQVVFITSSWGLGEMVVQGAVNPD EFYVHKPMLEAGQHPIVKKTFGSKQIKMIYSDRQEIGKQVEIIDTSVEERNAFSLNDEEIKELAKQAMIIEKHYKRPMDI EWAKDGIDGKLYIVQARPETVCSQSEQNVIERYELSNKADVLVEGRAIGQRIGKGPVRLVDSLDQMSLVQEGDVLVTDMT DPDWEPVMKKASAIVTNRGGRTCHAAIIARELGIPAIVGCGDATSKLTDGETVTVSCAEGETGYVYQGELEFEIKRSAVD ELPLLPTKVMMNVGNPDRAFDFAQIPNEGVGLARLEFIINKMIGIHPKALLNFDAQSDELKAEITERIRGYKDPIDFYVS KLTEGIATIASAFWPKRVIVRMSDFKSNEYSNLVGGKGYEPHEENPMLGFRGASRYISPVFEDCFELETQAIKRVRNEMG LKNVEIMIPFVRTPSEAASVIDLLAKFDLRRGDQGLKVIMMCELPSNAVLAEEFLKYFDGFSIGSNDMTQLTLGLDRDSG DVAHLFDERNPAVKAMLQMAIDAATKAGKYVGICGQGPSDHDDLAEWLMEQGISSVSLNPDTVIDTWLRLGKVSK
Specific function: Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=785, Percent_Identity=70.0636942675159, Blast_Score=1176, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=424, Percent_Identity=25.9433962264151, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1788726, Length=378, Percent_Identity=26.4550264550265, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI48994992, Length=190, Percent_Identity=31.0526315789474, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI1789193, Length=388, Percent_Identity=25.5154639175258, Blast_Score=76, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17564524, Length=369, Percent_Identity=26.5582655826558, Blast_Score=84, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR006319 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.2 [H]
Molecular weight: Translated: 88191; Mature: 88191
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLEKDMQKNTLWFNGLSMDDVDKVGGKNASLGEMVSNLANVGVSVPNGFATTSYAFNQF CCCCCCCCCCCEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LDHEGLDERIHQLLDELDVEDVEALRKTGATIRQWVLEAPFPADLEQDIRDNYKELTDNH HCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC PEISVAVRSSATAEDLPDASFAGQQETFLNVKGIDAVLEATKHVYASLFNDRAISYRVHQ CCEEEEEECCCCHHCCCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECC GFNHRGISLSAGIQRMVRSDKASSGVMFTLDTESGFDQVVFITSSWGLGEMVVQGAVNPD CCCCCCEEHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHCCCCCC EFYVHKPMLEAGQHPIVKKTFGSKQIKMIYSDRQEIGKQVEIIDTSVEERNAFSLNDEEI CEEEECCHHHCCCCCCCHHCCCCCCEEHHHHHHHHHCCEEEEEECCHHHCCCCCCCHHHH KELAKQAMIIEKHYKRPMDIEWAKDGIDGKLYIVQARPETVCSQSEQNVIERYELSNKAD HHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCCC VLVEGRAIGQRIGKGPVRLVDSLDQMSLVQEGDVLVTDMTDPDWEPVMKKASAIVTNRGG EEEECHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCC RTCHAAIIARELGIPAIVGCGDATSKLTDGETVTVSCAEGETGYVYQGELEFEIKRSAVD CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEECCEEEEEHHHHHH ELPLLPTKVMMNVGNPDRAFDFAQIPNEGVGLARLEFIINKMIGIHPKALLNFDAQSDEL CCCCCCHHHHEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHEECCCCCHHH KAEITERIRGYKDPIDFYVSKLTEGIATIASAFWPKRVIVRMSDFKSNEYSNLVGGKGYE HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEEHHCCCCCHHHCCCCCCCC PHEENPMLGFRGASRYISPVFEDCFELETQAIKRVRNEMGLKNVEIMIPFVRTPSEAASV CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHH IDLLAKFDLRRGDQGLKVIMMCELPSNAVLAEEFLKYFDGFSIGSNDMTQLTLGLDRDSG HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC DVAHLFDERNPAVKAMLQMAIDAATKAGKYVGICGQGPSDHDDLAEWLMEQGISSVSLNP CHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEECCCC DTVIDTWLRLGKVSK HHHHHHHHHHCCCCC >Mature Secondary Structure MFLEKDMQKNTLWFNGLSMDDVDKVGGKNASLGEMVSNLANVGVSVPNGFATTSYAFNQF CCCCCCCCCCCEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LDHEGLDERIHQLLDELDVEDVEALRKTGATIRQWVLEAPFPADLEQDIRDNYKELTDNH HCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC PEISVAVRSSATAEDLPDASFAGQQETFLNVKGIDAVLEATKHVYASLFNDRAISYRVHQ CCEEEEEECCCCHHCCCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECC GFNHRGISLSAGIQRMVRSDKASSGVMFTLDTESGFDQVVFITSSWGLGEMVVQGAVNPD CCCCCCEEHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHCCCCCC EFYVHKPMLEAGQHPIVKKTFGSKQIKMIYSDRQEIGKQVEIIDTSVEERNAFSLNDEEI CEEEECCHHHCCCCCCCHHCCCCCCEEHHHHHHHHHCCEEEEEECCHHHCCCCCCCHHHH KELAKQAMIIEKHYKRPMDIEWAKDGIDGKLYIVQARPETVCSQSEQNVIERYELSNKAD HHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCCC VLVEGRAIGQRIGKGPVRLVDSLDQMSLVQEGDVLVTDMTDPDWEPVMKKASAIVTNRGG EEEECHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCC RTCHAAIIARELGIPAIVGCGDATSKLTDGETVTVSCAEGETGYVYQGELEFEIKRSAVD CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCEEECCEEEEEHHHHHH ELPLLPTKVMMNVGNPDRAFDFAQIPNEGVGLARLEFIINKMIGIHPKALLNFDAQSDEL CCCCCCHHHHEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHEECCCCCHHH KAEITERIRGYKDPIDFYVSKLTEGIATIASAFWPKRVIVRMSDFKSNEYSNLVGGKGYE HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEEHHCCCCCHHHCCCCCCCC PHEENPMLGFRGASRYISPVFEDCFELETQAIKRVRNEMGLKNVEIMIPFVRTPSEAASV CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHH IDLLAKFDLRRGDQGLKVIMMCELPSNAVLAEEFLKYFDGFSIGSNDMTQLTLGLDRDSG HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC DVAHLFDERNPAVKAMLQMAIDAATKAGKYVGICGQGPSDHDDLAEWLMEQGISSVSLNP CHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEECCCC DTVIDTWLRLGKVSK HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1310524; 9097039; 9278503 [H]