| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
Click here to switch to the map view.
The map label for this gene is frpA [H]
Identifier: 156977658
GI number: 156977658
Start: 1600648
End: 1603527
Strand: Reverse
Name: frpA [H]
Synonym: VIBHAR_06446
Alternate gene names: 156977658
Gene position: 1603527-1600648 (Counterclockwise)
Preceding gene: 156977659
Following gene: 156977657
Centisome position: 72.75
GC content: 47.78
Gene sequence:
>2880_bases GTGAATAAAGGAAACACTAACATGTCAAAAAAGCTAGATTTAGTTAGGGATGTAATTAGCGCAAATCAACATACGAATGA TATTAACAAACTGGATAGTGAGTTGATGTCCCTTTGTGATGATGCAATGAGCAACCCTACAATAGATAACCTTAATAAAG TTCGAGATAAAATTGAACAAAGAAAAGAAACGGAACAACTTAGAGGAACTGACGCATTTGGAGCCTTAGGTTTGTTAGGA GAGCTTCTTGATAGTTTTATAGGTGAAATGGTCGACAAAGGTGATGCAATACAAGATCACTGGGAGCCTGCCATTTTTGA TGACATTGAAGAGTATATGCAAGGAGATAAGGCTAGGAGAAATGAGCTAAAAGAACTGTGTAATAAAGATGGCAAGCATT TGCAAGGACCGCGGCTTAGGGAATTGCCTAAATCTCCAACCGCTCCTGGCTCCCCTTTAATCCTTGACCTTGATGGTGAT GGAATTGAAACAACAGACTTGGAAAGTGGGGTGTACTTTGATCACGACGGTGATGGAAAGCGGGAGCGTTCTGCTTTTGT AGGGCCAGATGATGGGCTGTTAGTACTCGATGTAGATGGAGATGGAGCTATTACATCCGGCAATGAGTTGTTTGGCAATA ATACAAAATTGGGAGACGGTACATTTGCCAGCAATGGTTTTACAGCATTGAGCCAATACGACGAAAATGGCGATGGCCTG ATCGACAGCAAAGACCCTATTTTCAGCCAGTTAAAGGTTTTCAGGGACTTAAACCAAGATGGTATTAGTCAGAGTGAAGA ACTACGTTCACTGAACCACCATGGTGTCACATCACTCAAGGTTACCTATAACGATTCGCCATATGTGGATGAAAATGGGA ATGAGCACCGGCAACAGTCGTCATACACTAAATCAGATGGACGCAAAAATGATTTAAACGATGTTTGGTTTCAAATGGAA AAGTCAGACTTTATATATCCAGAAATCGACATTCCTAAAGATATTCTTAAACTTCCAAACATTAACGGTATCGGGTCTCT TCCTTCTCTACATTATGCTATGGCAAAGGATGGATCGGGTCGCCTTAAGTCATTGATAGAGAGCTATCAAGCAGGTACTA CAGATCAATCTTCTGCAGAGTTGCTGACTGAAATTATGTTTACATGGGCGGGAGTAACAGGTGACTATTCACCATATTAT CAAAGCAAGATTGATGCACGCAAGATACGTACATTGGAAGCATTTTATGGTTACAAAATCGATAAGCCTCGTGGGTCAGG CGTTCAGTACACAGCGCTCTTTAGCGGGATTTTTAAAAATCTAAGCAGAGAGATTGGCCTTAGATTAAGTGGGACCGAAT CAATTTTGTTTCGAGAGGTAAAGTGGATCCAAGAGGAAAAAACGGGTAACTGGTATGGCGATTTCTCTGAAGTTGCAGAT AAAGTCATCGAGCTTGTGTCGAAAGGGACTGCAGGAGCTTGGAAAGAGACCATCCATTTTTTTAACACACTTAAGTTAAG TGACGATGAGTATTCTACGAACCAAAAAAATCTCTACTCCTACCTTTTTGAGTCCGCTCACTCTTCTACGGCCGATAATT TACCTGAAGGTTTCGACAAGTTAATCCATATGTCGATTTCACAAGAGAGCAGAGTTGGAGATGAGTTTGACAATGATCTG TTTGGATCGAGTTCCGATGATTTTGTCTACGGTAACAAGGGAGATGACTCGATTACAGTAGGCGCCGGCAACGACTTTGT TTATGGAGGTGAGGGCAACGATACATTGCATGGTGGCACGGGCAACGACCGAGTGTCAGGCGGTGAGGGCGACGATCACC TGACGGTCGCTTACAGTGGCAGCAACACCCTTGATGGTGGCGCGGGTGATGACGTTCTGACGGTCGAAACACCGACGAGC TCAGGTCGTTACAGTAGCTACTATAAAACAGCCAACAATGCCCGTAACACCTTAATCGGTGGGGCGGGCAATGACCGCCT AGTGGGCGGCCTCGGGGCGGAGCGCTACGAGTTCAATCGCGGGGATGGTCAGGACACCATCCGTGACAGAGACGTGTACG GCAGCAGTGTTGACCAAATTGTGTTTGGTGAGGGCATCGTCCGTGACGAGTTGAGTCTGCGCCGTGAAGGGAACCATCTG GTCATCATGGTAGGTGGGCCGGACTCGGGTGACTCGATCACCATTGAAGAAGGGTACGTCAACAGTCAGCATCAAATCGA AGAGATTGTGTTGTCGGATGGCAGTACGGTTTCGCCTCAGTCGTTGCCAATCTTAAGCAGCGCCGAAGCGGATGAGCTGA GAGGTGGGTACTTTGCGGATGTGATTGATGGCCGCGAAGGCGATGACCGCCTCTATGGTGAAGGGGGCGACGACACGTTA GAAGGCGGTCAAGGAGATGATGTGCTCGATGGGGGCGCAGGCAATGACACGTTGAACGCGGGGGCTGGCAATGACACCGT CACGGCAGGCGCAGGTAATGATGTGGTTGCAGGCGGTCTCGGTAACGATACGTTGCATGGCGGCACGGGCAACGACCAAG TGTCCGGCGGTGAGGGCGACGATCACCTGACGGTCGCTTACAGTGGCAGTAATACCTTAGACGGTGGCGCGGGTGATGAC GTTCTGACGGTCGAAACACCGACGAGCTCAGGTCGTTACAGTAGCTACTATAAAACAGCCAACAATGCCCGTAACACCTT AATCGGTGGGGCGGGCAATGACCGCCTAGTGGGCGGCCTCGGGGCGGAGCGCTACGAGTTCAATCGCGGGGATGGTCAGG ACACCATCGTGACAGAGACGTGTACGGCAGCAGTGTTGACCAAATTGTGTTTGGTGAGGGCATCGTCCGTGACGAGTTGA
Upstream 100 bases:
>100_bases AATTTTCATAAATTTGGTGTTGGGGTTGGTGGTCTTATCTCCGATTGGGAATCGAAAAAATTAATAATTAGAAAGCTGTG GCCGGAATATAATTTAAAGT
Downstream 100 bases:
>100_bases GTCTGCGCCGTGAAGGGAACCATCTGGTCATCATGGTAGGTGGGCCGGACTCGGGTGACTCGATCACCATTGAAGAAGGG TACGTCAACAGTCAGCATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 959; Mature: 959
Protein sequence:
>959_residues MNKGNTNMSKKLDLVRDVISANQHTNDINKLDSELMSLCDDAMSNPTIDNLNKVRDKIEQRKETEQLRGTDAFGALGLLG ELLDSFIGEMVDKGDAIQDHWEPAIFDDIEEYMQGDKARRNELKELCNKDGKHLQGPRLRELPKSPTAPGSPLILDLDGD GIETTDLESGVYFDHDGDGKRERSAFVGPDDGLLVLDVDGDGAITSGNELFGNNTKLGDGTFASNGFTALSQYDENGDGL IDSKDPIFSQLKVFRDLNQDGISQSEELRSLNHHGVTSLKVTYNDSPYVDENGNEHRQQSSYTKSDGRKNDLNDVWFQME KSDFIYPEIDIPKDILKLPNINGIGSLPSLHYAMAKDGSGRLKSLIESYQAGTTDQSSAELLTEIMFTWAGVTGDYSPYY QSKIDARKIRTLEAFYGYKIDKPRGSGVQYTALFSGIFKNLSREIGLRLSGTESILFREVKWIQEEKTGNWYGDFSEVAD KVIELVSKGTAGAWKETIHFFNTLKLSDDEYSTNQKNLYSYLFESAHSSTADNLPEGFDKLIHMSISQESRVGDEFDNDL FGSSSDDFVYGNKGDDSITVGAGNDFVYGGEGNDTLHGGTGNDRVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTS SGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHL VIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTL EGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDD VLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIVTETCTAAVLTKLCLVRASSVTS
Sequences:
>Translated_959_residues MNKGNTNMSKKLDLVRDVISANQHTNDINKLDSELMSLCDDAMSNPTIDNLNKVRDKIEQRKETEQLRGTDAFGALGLLG ELLDSFIGEMVDKGDAIQDHWEPAIFDDIEEYMQGDKARRNELKELCNKDGKHLQGPRLRELPKSPTAPGSPLILDLDGD GIETTDLESGVYFDHDGDGKRERSAFVGPDDGLLVLDVDGDGAITSGNELFGNNTKLGDGTFASNGFTALSQYDENGDGL IDSKDPIFSQLKVFRDLNQDGISQSEELRSLNHHGVTSLKVTYNDSPYVDENGNEHRQQSSYTKSDGRKNDLNDVWFQME KSDFIYPEIDIPKDILKLPNINGIGSLPSLHYAMAKDGSGRLKSLIESYQAGTTDQSSAELLTEIMFTWAGVTGDYSPYY QSKIDARKIRTLEAFYGYKIDKPRGSGVQYTALFSGIFKNLSREIGLRLSGTESILFREVKWIQEEKTGNWYGDFSEVAD KVIELVSKGTAGAWKETIHFFNTLKLSDDEYSTNQKNLYSYLFESAHSSTADNLPEGFDKLIHMSISQESRVGDEFDNDL FGSSSDDFVYGNKGDDSITVGAGNDFVYGGEGNDTLHGGTGNDRVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTS SGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHL VIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTL EGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDD VLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIVTETCTAAVLTKLCLVRASSVTS >Mature_959_residues MNKGNTNMSKKLDLVRDVISANQHTNDINKLDSELMSLCDDAMSNPTIDNLNKVRDKIEQRKETEQLRGTDAFGALGLLG ELLDSFIGEMVDKGDAIQDHWEPAIFDDIEEYMQGDKARRNELKELCNKDGKHLQGPRLRELPKSPTAPGSPLILDLDGD GIETTDLESGVYFDHDGDGKRERSAFVGPDDGLLVLDVDGDGAITSGNELFGNNTKLGDGTFASNGFTALSQYDENGDGL IDSKDPIFSQLKVFRDLNQDGISQSEELRSLNHHGVTSLKVTYNDSPYVDENGNEHRQQSSYTKSDGRKNDLNDVWFQME KSDFIYPEIDIPKDILKLPNINGIGSLPSLHYAMAKDGSGRLKSLIESYQAGTTDQSSAELLTEIMFTWAGVTGDYSPYY QSKIDARKIRTLEAFYGYKIDKPRGSGVQYTALFSGIFKNLSREIGLRLSGTESILFREVKWIQEEKTGNWYGDFSEVAD KVIELVSKGTAGAWKETIHFFNTLKLSDDEYSTNQKNLYSYLFESAHSSTADNLPEGFDKLIHMSISQESRVGDEFDNDL FGSSSDDFVYGNKGDDSITVGAGNDFVYGGEGNDTLHGGTGNDRVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTS SGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHL VIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTL EGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDD VLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIVTETCTAAVLTKLCLVRASSVTS
Specific function: May participate in the pathogenesis of meningococcal disease [H]
COG id: COG2931
COG function: function code Q; RTX toxins and related Ca2+-binding proteins
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein. Secreted (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 12 hemolysin-type calcium-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010566 - InterPro: IPR018511 - InterPro: IPR001343 - InterPro: IPR003995 - InterPro: IPR011049 [H]
Pfam domain/function: PF06594 HCBP_related; PF00353 HemolysinCabind [H]
EC number: NA
Molecular weight: Translated: 103352; Mature: 103352
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: PS00330 HEMOLYSIN_CALCIUM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKGNTNMSKKLDLVRDVISANQHTNDINKLDSELMSLCDDAMSNPTIDNLNKVRDKIEQ CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RKETEQLRGTDAFGALGLLGELLDSFIGEMVDKGDAIQDHWEPAIFDDIEEYMQGDKARR HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCHHHH NELKELCNKDGKHLQGPRLRELPKSPTAPGSPLILDLDGDGIETTDLESGVYFDHDGDGK HHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCC RERSAFVGPDDGLLVLDVDGDGAITSGNELFGNNTKLGDGTFASNGFTALSQYDENGDGL HHCCCCCCCCCCEEEEEECCCCCEECCCHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC IDSKDPIFSQLKVFRDLNQDGISQSEELRSLNHHGVTSLKVTYNDSPYVDENGNEHRQQS CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHH SYTKSDGRKNDLNDVWFQMEKSDFIYPEIDIPKDILKLPNINGIGSLPSLHYAMAKDGSG CCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCCH RLKSLIESYQAGTTDQSSAELLTEIMFTWAGVTGDYSPYYQSKIDARKIRTLEAFYGYKI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCEEE DKPRGSGVQYTALFSGIFKNLSREIGLRLSGTESILFREVKWIQEEKTGNWYGDFSEVAD CCCCCCCEEHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH KVIELVSKGTAGAWKETIHFFNTLKLSDDEYSTNQKNLYSYLFESAHSSTADNLPEGFDK HHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH LIHMSISQESRVGDEFDNDLFGSSSDDFVYGNKGDDSITVGAGNDFVYGGEGNDTLHGGT HHHHHCCHHHHCCCHHCCCCCCCCCCCEEECCCCCCEEEEECCCCEEECCCCCCCCCCCC GNDRVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIG CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEE GAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHL CCCCCCEEECCCCCCEECCCCCCCCCHHHCCCCCCCCCEEEECCCCHHHHHHHHCCCCEE VIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFAD EEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEE VIDGREGDDRLYGEGGDDTLEGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGL ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCC GNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTA CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH NNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIVTETCTAAVLTKLCLVRASSVTS CCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNKGNTNMSKKLDLVRDVISANQHTNDINKLDSELMSLCDDAMSNPTIDNLNKVRDKIEQ CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RKETEQLRGTDAFGALGLLGELLDSFIGEMVDKGDAIQDHWEPAIFDDIEEYMQGDKARR HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCHHHH NELKELCNKDGKHLQGPRLRELPKSPTAPGSPLILDLDGDGIETTDLESGVYFDHDGDGK HHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCC RERSAFVGPDDGLLVLDVDGDGAITSGNELFGNNTKLGDGTFASNGFTALSQYDENGDGL HHCCCCCCCCCCEEEEEECCCCCEECCCHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC IDSKDPIFSQLKVFRDLNQDGISQSEELRSLNHHGVTSLKVTYNDSPYVDENGNEHRQQS CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHH SYTKSDGRKNDLNDVWFQMEKSDFIYPEIDIPKDILKLPNINGIGSLPSLHYAMAKDGSG CCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCCH RLKSLIESYQAGTTDQSSAELLTEIMFTWAGVTGDYSPYYQSKIDARKIRTLEAFYGYKI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCEEE DKPRGSGVQYTALFSGIFKNLSREIGLRLSGTESILFREVKWIQEEKTGNWYGDFSEVAD CCCCCCCEEHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH KVIELVSKGTAGAWKETIHFFNTLKLSDDEYSTNQKNLYSYLFESAHSSTADNLPEGFDK HHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH LIHMSISQESRVGDEFDNDLFGSSSDDFVYGNKGDDSITVGAGNDFVYGGEGNDTLHGGT HHHHHCCHHHHCCCHHCCCCCCCCCCCEEECCCCCCEEEEECCCCEEECCCCCCCCCCCC GNDRVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIG CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEE GAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHL CCCCCCEEECCCCCCEECCCCCCCCCHHHCCCCCCCCCEEEECCCCHHHHHHHHCCCCEE VIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFAD EEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEE VIDGREGDDRLYGEGGDDTLEGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGL ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCC GNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTA CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH NNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIVTETCTAAVLTKLCLVRASSVTS CCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]