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The map label for this gene is ywbI [H]

Identifier: 156977581

GI number: 156977581

Start: 1543101

End: 1544042

Strand: Direct

Name: ywbI [H]

Synonym: VIBHAR_06369

Alternate gene names: 156977581

Gene position: 1543101-1544042 (Clockwise)

Preceding gene: 156977579

Following gene: 156977582

Centisome position: 70.01

GC content: 42.68

Gene sequence:

>942_bases
ATGTTAAAATCACACATAGAAAAGAAAAACTATGTTTTAGCATGTTCATTCGTAAGGAAAACTATGGATACTCGGTTCTT
GGAAAGCTTAATTTCAGTGGTGGAAGAAGGTTCTATAGCGAGTGCTGCACGATCTCAAATGATCACACCAGCCGCAGTAA
GCCAAAGAATCCAAGCACTTGAAGCAGAGTTTAAATGCAAATTGTTCAGCCGAGCTGGTAGTACAGTCCAACCAACTGAC
GCTTGTTTAGCACTGTTACCGAAAGTTAAACGTCTATTACAGGATGTTCGAATACTGGTTGATTCTGTACAAGATTCAGG
TCTGAGTGGCACGTTGCGTGTGGGTGCAAACTCTACGTCCTTAACTGCTTTTATCCCTGGTGCACTAAAGTCCATTCGTC
TAGCTGCTCCGAACGCAACATTCCAAGTGATTCCTGGAAATTCGATTGATTTATACCGTGATTTACAAGAGGGATTACTT
GATGCGGCGATCATGGTAGAACCACCGACCAGCTTACCCAAATCATTACGTTCTTTGCCTTTGAGAACAGAACCATTAGT
TCTAATACATCACCCAAAATACAAAGGCTCTCCTATGTCGATCTTACAAGCATCTTCTTACATTCGTTATGATCCTACGT
GCTGGGGAGGACAAATCGCCGAAAAGTACATGATCCACAACCGAATTAAAAAGGCACCTATTTTCGATTTAGACTCTCTC
GAAGCGATCGCACAATTGGTTAGTGAGGATGTGGGTGTATCATTCGTTCCTATGTGGGCTGGTCTGGAACATTTCTCTAA
TAAGATCAGTATCACACAGGTTGATAACGACCAACACAATACCGAAATCGTTCTTGTCAGTGCCTTTCATCCACGACAAC
CCAAGTTGCTAGGGCTCTTCTATGAACACCTACTTAAGCTAGAGTCTGTCAACGCGGCTTAA

Upstream 100 bases:

>100_bases
AAATAGCAAGCATCAGAGAAGCGATAAAAAAAGCAATCCAAAGGTTATAATCCATAGTAAAACTCCATAAGCTGTAAAAC
GAACACTGCGAGCTGTCAGT

Downstream 100 bases:

>100_bases
GATTCGGAAGTAATATGTAAGAATAGGATATCAATGAAATCGCGAGGATGTTGAAGAACAAAAATTGGCGAACTGGGCTT
GTACTTCTATACCTCATAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLKSHIEKKNYVLACSFVRKTMDTRFLESLISVVEEGSIASAARSQMITPAAVSQRIQALEAEFKCKLFSRAGSTVQPTD
ACLALLPKVKRLLQDVRILVDSVQDSGLSGTLRVGANSTSLTAFIPGALKSIRLAAPNATFQVIPGNSIDLYRDLQEGLL
DAAIMVEPPTSLPKSLRSLPLRTEPLVLIHHPKYKGSPMSILQASSYIRYDPTCWGGQIAEKYMIHNRIKKAPIFDLDSL
EAIAQLVSEDVGVSFVPMWAGLEHFSNKISITQVDNDQHNTEIVLVSAFHPRQPKLLGLFYEHLLKLESVNAA

Sequences:

>Translated_313_residues
MLKSHIEKKNYVLACSFVRKTMDTRFLESLISVVEEGSIASAARSQMITPAAVSQRIQALEAEFKCKLFSRAGSTVQPTD
ACLALLPKVKRLLQDVRILVDSVQDSGLSGTLRVGANSTSLTAFIPGALKSIRLAAPNATFQVIPGNSIDLYRDLQEGLL
DAAIMVEPPTSLPKSLRSLPLRTEPLVLIHHPKYKGSPMSILQASSYIRYDPTCWGGQIAEKYMIHNRIKKAPIFDLDSL
EAIAQLVSEDVGVSFVPMWAGLEHFSNKISITQVDNDQHNTEIVLVSAFHPRQPKLLGLFYEHLLKLESVNAA
>Mature_313_residues
MLKSHIEKKNYVLACSFVRKTMDTRFLESLISVVEEGSIASAARSQMITPAAVSQRIQALEAEFKCKLFSRAGSTVQPTD
ACLALLPKVKRLLQDVRILVDSVQDSGLSGTLRVGANSTSLTAFIPGALKSIRLAAPNATFQVIPGNSIDLYRDLQEGLL
DAAIMVEPPTSLPKSLRSLPLRTEPLVLIHHPKYKGSPMSILQASSYIRYDPTCWGGQIAEKYMIHNRIKKAPIFDLDSL
EAIAQLVSEDVGVSFVPMWAGLEHFSNKISITQVDNDQHNTEIVLVSAFHPRQPKLLGLFYEHLLKLESVNAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=245, Percent_Identity=29.3877551020408, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=28.9772727272727, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34463; Mature: 34463

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSHIEKKNYVLACSFVRKTMDTRFLESLISVVEEGSIASAARSQMITPAAVSQRIQAL
CCCCHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
EAEFKCKLFSRAGSTVQPTDACLALLPKVKRLLQDVRILVDSVQDSGLSGTLRVGANSTS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCE
LTAFIPGALKSIRLAAPNATFQVIPGNSIDLYRDLQEGLLDAAIMVEPPTSLPKSLRSLP
EEEECCHHHHHEEEECCCCEEEEECCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHHHCC
LRTEPLVLIHHPKYKGSPMSILQASSYIRYDPTCWGGQIAEKYMIHNRIKKAPIFDLDSL
CCCCCEEEEECCCCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
EAIAQLVSEDVGVSFVPMWAGLEHFSNKISITQVDNDQHNTEIVLVSAFHPRQPKLLGLF
HHHHHHHHHCCCCEEEHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHH
YEHLLKLESVNAA
HHHHHHHHCCCCC
>Mature Secondary Structure
MLKSHIEKKNYVLACSFVRKTMDTRFLESLISVVEEGSIASAARSQMITPAAVSQRIQAL
CCCCHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
EAEFKCKLFSRAGSTVQPTDACLALLPKVKRLLQDVRILVDSVQDSGLSGTLRVGANSTS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCE
LTAFIPGALKSIRLAAPNATFQVIPGNSIDLYRDLQEGLLDAAIMVEPPTSLPKSLRSLP
EEEECCHHHHHEEEECCCCEEEEECCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHHHCC
LRTEPLVLIHHPKYKGSPMSILQASSYIRYDPTCWGGQIAEKYMIHNRIKKAPIFDLDSL
CCCCCEEEEECCCCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
EAIAQLVSEDVGVSFVPMWAGLEHFSNKISITQVDNDQHNTEIVLVSAFHPRQPKLLGLF
HHHHHHHHHCCCCEEEHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHH
YEHLLKLESVNAA
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]