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The map label for this gene is ykfC [H]

Identifier: 156977529

GI number: 156977529

Start: 1492564

End: 1493856

Strand: Reverse

Name: ykfC [H]

Synonym: VIBHAR_06317

Alternate gene names: 156977529

Gene position: 1493856-1492564 (Counterclockwise)

Preceding gene: 156977532

Following gene: 156977527

Centisome position: 67.78

GC content: 48.18

Gene sequence:

>1293_bases
ATGGAACAAATCTGCTCCTCAACCAACCTGAATCAAGCTTTACGAAGAGTGAAGAAGAACAAGGGATGTGCAGGTGTCGA
CAAACTCGACATAGATGCAACTATCTTTAAGCTTCGACAAGCTTCAAACGGGCAAGCGCTTCGCCAGAGTCTTCTGGATG
GAAGCTACCGACCTCAACCCGTTCTTGGTGTGGGAATCCCCAAACCGAGTGGTGGCGTCAGACAACTAGGTATCCCAACA
GTGCTCGATAGAATTGTCCAACAGGCAATCACCTCAGTACTGTCAGATATCTATGAAGCTAAGTTCTCCAATAGCAGTTA
CGGATTTAGACCCAACCGCAGTGCACATCATGCGCTAGCGGCAGCCAGTCGCTACATCCGAGAGGGGCGAGGTTATGTAG
TAGATATCGACCTAGCGAAATACTTCGATACCGTTAATCACGATAGACTGATGCACAGACTGTCAGAGGATATCGCGGAT
AAACGAGTATTGAAGCTCATCAGGTCATATCTACAGGCAGGCATAATGCGAAACGGTTTAGTCGAACAGAGACAACGAGG
GACACCACAGGGTGGTCCATTATCTCCGTTGCTATCCAATATCGTATTAGATGAACTGGATAAAGAGCTAGAGCGTAGAG
GGCATAAGTTCTGTCGATATGCAGACGACTGTCAAATCTATGTTGGTAGTGAGGAAGCCGCTTATCGAGTGAAAGAGTCG
ATAACGGAGTACTTGGAGCAAAAACTGAAACTCACGGTAAACCGAGAGAAAAGTGCAGCAACAAGAGTGACAGAGCGAAC
TTACCTAAGCCACCGCTTCGGGATAGATGGGACAATCCATATATCGAAGCCAGCGCAAACTCAAATGAAGACGCGAGTGC
GGCAGATAACGAAGCGAAACCGAGGTCGAGAGTTAAAGGTGGTAATCGCCGAGTTAACTCAATACCTAAGAGGTTGGCAA
GACTACTTCAAACTCGCCATACGGAAGAGCAGCATGAAGCGCTTGGACGAATGGATACGGCGACGGCTAAGATGCTATCG
ACTTAAGCAACGCAAACACAGATACGGCATAGCGACATGGTTACAGCGACAAGGTGTAACAGAGCGTAATGCGTGGAAGT
TAGCGATGTCAGATAAAGGTTGGTGGCGGCTAGCATTAACGCCCCAGACAAATCACGCTATGCCAACAAAATGGTTCGAG
GAGTTGGGTCTGTACTCGTTGCGAGATGGGTATGAGTCACTAAAAGTATATTCGGAACCGCCGTATGCGACCCACGCTTG
TACGGTGGTGTGA

Upstream 100 bases:

>100_bases
CCCAATGGGCGATACCGCAAGTAAAGCTCACGGTGACGAAGAATGGCAAGCATGGTCGGCGTAGACAGGAGGACGAGTCT
TGGTGACCTCAACTTCGTTG

Downstream 100 bases:

>100_bases
GAGGACGGAGGCCGTGAGGCCTCCTCCTACTCGATCGCCGAATAGTTAGTGCTGCATCAACGGTGTGTATGGCCTGACCG
TTGCCTGATAAATCGTGATG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIAD
KRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKES
ITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYLRGWQ
DYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFE
ELGLYSLRDGYESLKVYSEPPYATHACTVV

Sequences:

>Translated_430_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIAD
KRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKES
ITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYLRGWQ
DYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFE
ELGLYSLRDGYESLKVYSEPPYATHACTVV
>Mature_430_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIAD
KRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKES
ITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYLRGWQ
DYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFE
ELGLYSLRDGYESLKVYSEPPYATHACTVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=315, Percent_Identity=29.8412698412698, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6226521, Length=204, Percent_Identity=34.3137254901961, Blast_Score=113, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49545; Mature: 49545

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQP
CCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
VLGVGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALA
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGL
HHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKES
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
ITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC
RGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEP
HHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHCCHHHHHCCCCC
PYATHACTVV
CCCCCCCCCC
>Mature Secondary Structure
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQP
CCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
VLGVGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALA
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AASRYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGL
HHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKES
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
ITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC
RGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEP
HHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHCCHHHHHCCCCC
PYATHACTVV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]