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The map label for this gene is ydeE [H]

Identifier: 156977513

GI number: 156977513

Start: 1478387

End: 1479295

Strand: Reverse

Name: ydeE [H]

Synonym: VIBHAR_06300

Alternate gene names: 156977513

Gene position: 1479295-1478387 (Counterclockwise)

Preceding gene: 156977514

Following gene: 156977512

Centisome position: 67.12

GC content: 44.66

Gene sequence:

>909_bases
ATGAATACACCTGCATTTGACCGTATCAGCCGTGTCTTGGCTTATATCCACGCGAACCTTAGCTCGACACTATCATTGGA
AGATATTGCGAAGCAGAGTTGCTGGTCACGATGGCAACTGCAAAGAGTGTTTCAAGCTGAAACCGGACTTACTGTTGCAA
ACTACGTGAGAGAACTTAAGTTAAGCCAAGCGGCTGAAGAATTGTTGGACAGCAAAGAGCGAGTGATCGATATCGCCCTT
GGACTCGGATTCAATTCAGAAATTAGTTTTAGCCGTTCGTTTAAGCAGATGTTTGGGGCAAGCCCTAGTCAGTACAGAAA
GGCGGGGAAAAGAGTAGGGCTAAGAAAACCGATACAAGTGTCTGAAACGGTGAGTGCTGAAGAAAAGGGCGCACTAAGTT
TTGTTAATGTGCGTATCGACGAAAGAGAGCCTTTCTTGGTAAAGGGGATTACCTCAGAAATCAGTGGGTTGTTTTCATTA
ACGCAAGATTTTGCTCAGAAAGTCCCTCAACTGTGGTCGCGTTTAAAGGGAGAAGTGACGCTTCCAGACGAAAATATCTC
TCAGTTTATTGGCGTTGTCGACCTTACCCAATCGAGTTTTGATGGTACCAATATCCGCTATTGGGCTGGGGTCGAACTTA
AATATGAAATCACAATTCCTCAATTGCCAAGCATTATCTCTGATAAATTAGAGGTCTTGTCCGTTCCTAAACAAACCTAC
GCAGTGGTTAAGCACTGTGGCCCGATTGAGAACCTTCGATACACTCTGAGCTGGTTCGTACTTAATTGGTTGCCGAAATC
TGGCTATCGAGGTGTCGACGGTTATGAACTTGAAGTGTACCCATCAGCCTATAAACCTAATGACGCAGATGCCGTCATGG
AATACTGGGTGCCTATTATTAAATCGTAG

Upstream 100 bases:

>100_bases
GCTTTCGCCATTTTCAAGTGATAAAAGCGTCTTTAAATGATAAAAGTATCTCTGAAATCTAACATGTTATGACCACTACT
GAGAATTTGATTGCTTGACT

Downstream 100 bases:

>100_bases
TCATATCTTCTTTCTGCGTACTCCCTACAAAGCCTCTCAACCAATAAGGTTAATTGTATTTTTAATCATCAATTGACCTA
ACTCTTCTCAAAATTGGCCA

Product: methylphosphotriester-DNA alkyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNTPAFDRISRVLAYIHANLSSTLSLEDIAKQSCWSRWQLQRVFQAETGLTVANYVRELKLSQAAEELLDSKERVIDIAL
GLGFNSEISFSRSFKQMFGASPSQYRKAGKRVGLRKPIQVSETVSAEEKGALSFVNVRIDEREPFLVKGITSEISGLFSL
TQDFAQKVPQLWSRLKGEVTLPDENISQFIGVVDLTQSSFDGTNIRYWAGVELKYEITIPQLPSIISDKLEVLSVPKQTY
AVVKHCGPIENLRYTLSWFVLNWLPKSGYRGVDGYELEVYPSAYKPNDADAVMEYWVPIIKS

Sequences:

>Translated_302_residues
MNTPAFDRISRVLAYIHANLSSTLSLEDIAKQSCWSRWQLQRVFQAETGLTVANYVRELKLSQAAEELLDSKERVIDIAL
GLGFNSEISFSRSFKQMFGASPSQYRKAGKRVGLRKPIQVSETVSAEEKGALSFVNVRIDEREPFLVKGITSEISGLFSL
TQDFAQKVPQLWSRLKGEVTLPDENISQFIGVVDLTQSSFDGTNIRYWAGVELKYEITIPQLPSIISDKLEVLSVPKQTY
AVVKHCGPIENLRYTLSWFVLNWLPKSGYRGVDGYELEVYPSAYKPNDADAVMEYWVPIIKS
>Mature_302_residues
MNTPAFDRISRVLAYIHANLSSTLSLEDIAKQSCWSRWQLQRVFQAETGLTVANYVRELKLSQAAEELLDSKERVIDIAL
GLGFNSEISFSRSFKQMFGASPSQYRKAGKRVGLRKPIQVSETVSAEEKGALSFVNVRIDEREPFLVKGITSEISGLFSL
TQDFAQKVPQLWSRLKGEVTLPDENISQFIGVVDLTQSSFDGTNIRYWAGVELKYEITIPQLPSIISDKLEVLSVPKQTY
AVVKHCGPIENLRYTLSWFVLNWLPKSGYRGVDGYELEVYPSAYKPNDADAVMEYWVPIIKS

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=178, Percent_Identity=30.8988764044944, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081928, Length=105, Percent_Identity=39.0476190476191, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=37.7551020408163, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34103; Mature: 34103

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPAFDRISRVLAYIHANLSSTLSLEDIAKQSCWSRWQLQRVFQAETGLTVANYVRELK
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LSQAAEELLDSKERVIDIALGLGFNSEISFSRSFKQMFGASPSQYRKAGKRVGLRKPIQV
HHHHHHHHHCCHHHEEEHEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
SETVSAEEKGALSFVNVRIDEREPFLVKGITSEISGLFSLTQDFAQKVPQLWSRLKGEVT
HHHCCHHHCCCEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LPDENISQFIGVVDLTQSSFDGTNIRYWAGVELKYEITIPQLPSIISDKLEVLSVPKQTY
CCCHHHHHHHHHHHHCCCCCCCCCEEEEECEEEEEEEECCCCHHHHHHHHHHHHCCHHHH
AVVKHCGPIENLRYTLSWFVLNWLPKSGYRGVDGYELEVYPSAYKPNDADAVMEYWVPII
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
KS
CC
>Mature Secondary Structure
MNTPAFDRISRVLAYIHANLSSTLSLEDIAKQSCWSRWQLQRVFQAETGLTVANYVRELK
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LSQAAEELLDSKERVIDIALGLGFNSEISFSRSFKQMFGASPSQYRKAGKRVGLRKPIQV
HHHHHHHHHCCHHHEEEHEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
SETVSAEEKGALSFVNVRIDEREPFLVKGITSEISGLFSLTQDFAQKVPQLWSRLKGEVT
HHHCCHHHCCCEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LPDENISQFIGVVDLTQSSFDGTNIRYWAGVELKYEITIPQLPSIISDKLEVLSVPKQTY
CCCHHHHHHHHHHHHCCCCCCCCCEEEEECEEEEEEEECCCCHHHHHHHHHHHHCCHHHH
AVVKHCGPIENLRYTLSWFVLNWLPKSGYRGVDGYELEVYPSAYKPNDADAVMEYWVPII
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
KS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]