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The map label for this gene is rarD [C]

Identifier: 156977102

GI number: 156977102

Start: 1081505

End: 1082410

Strand: Reverse

Name: rarD [C]

Synonym: VIBHAR_05888

Alternate gene names: 156977102

Gene position: 1082410-1081505 (Counterclockwise)

Preceding gene: 156977103

Following gene: 156977101

Centisome position: 49.11

GC content: 43.71

Gene sequence:

>906_bases
ATGAACAACAGTCTTTACGGCAATTTAATGGCTGCATTGTCCTTTGTTATTTGGGGATTGTTGCCTATTTATTATCGCTT
TCTGCCAAATGCATCGATGGATGAACTGTTGGCGTTGCGCATCATTGGCTCGGTGCCAGTAGGGTTTATTTTAGTATTGG
CGATGACGCGCCATATGCCGAAATGGTCTAAGGTTTGGCAAGATAAAAAGTCACTTTGGTATACGTTTGTCGCCAGTAGC
CTTATGTGTATTTCTTGGGTTGCCTTTACATGGGCGCTGACCAACAACCGAGTGATTGACGCTAGCTTGGGTTTCTTCAT
TGGTCCTCTTATTTCTGTCGCGCTTGGTGTGTTTATCTTGGGTGATAAGCTATCCAAAGGACAATTTATTGCGATTCTTT
TAGCGACCATTGGCGTGTTGTATCAGGTTTTCCAGTATGGTCAATTACCGCTGGTGGCACTGACGATGGGCTTGTTCTTC
TCTCTGTATGGTCTTTTTAAGAAGAAGATTAATTTTGATTGGAGTACAACGCTGTTTATTGAGGCGTTAGTGCTGACACC
AATCGCGCTTGCCTATCTTATTGTTAAACAAGTAACGGTGGGAGAGTTGGCCTCTACGGTAGATATGACGACCTTCATGC
TATATTTAGGCAGTGCACCGGTGACGATTCTACCGCTGATTTTCTACTCGATCGCGCTCCGAATTACAAACTTGTCTACA
GTTGGACTTATGCAATACATTGAGCCAAGCCTACAGTTTGTGTTGGCTGTCGTGTTCTTTGGTGAGTTGTTCGACAGCGT
AAAAGCGGTGACATTTGCCTTTATCTGGGTTGGTCTACTGTTTACGATTTTTGAGGGTGTGGCCAAGCTATCAAAACGAA
GAAAGCTTGCTGACCAATCAATTTAA

Upstream 100 bases:

>100_bases
CAAGGCTTAGCTTTGTAAAGGCGATCTTCGCTCTCAAATTCACTTTACAAAACGACTTTGCGCTATAGAATCGCGTCACT
TTTTATATGTCGAGTTAGTT

Downstream 100 bases:

>100_bases
CCCATTCCTTCTTTAGGTTCATAGGGCTAGCTTATATTTTAGGTGAAGCTATCGTCTTTGATATTACTCAACTGCCTAAG
CTGATGTCCGAAATCAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNNSLYGNLMAALSFVIWGLLPIYYRFLPNASMDELLALRIIGSVPVGFILVLAMTRHMPKWSKVWQDKKSLWYTFVASS
LMCISWVAFTWALTNNRVIDASLGFFIGPLISVALGVFILGDKLSKGQFIAILLATIGVLYQVFQYGQLPLVALTMGLFF
SLYGLFKKKINFDWSTTLFIEALVLTPIALAYLIVKQVTVGELASTVDMTTFMLYLGSAPVTILPLIFYSIALRITNLST
VGLMQYIEPSLQFVLAVVFFGELFDSVKAVTFAFIWVGLLFTIFEGVAKLSKRRKLADQSI

Sequences:

>Translated_301_residues
MNNSLYGNLMAALSFVIWGLLPIYYRFLPNASMDELLALRIIGSVPVGFILVLAMTRHMPKWSKVWQDKKSLWYTFVASS
LMCISWVAFTWALTNNRVIDASLGFFIGPLISVALGVFILGDKLSKGQFIAILLATIGVLYQVFQYGQLPLVALTMGLFF
SLYGLFKKKINFDWSTTLFIEALVLTPIALAYLIVKQVTVGELASTVDMTTFMLYLGSAPVTILPLIFYSIALRITNLST
VGLMQYIEPSLQFVLAVVFFGELFDSVKAVTFAFIWVGLLFTIFEGVAKLSKRRKLADQSI
>Mature_301_residues
MNNSLYGNLMAALSFVIWGLLPIYYRFLPNASMDELLALRIIGSVPVGFILVLAMTRHMPKWSKVWQDKKSLWYTFVASS
LMCISWVAFTWALTNNRVIDASLGFFIGPLISVALGVFILGDKLSKGQFIAILLATIGVLYQVFQYGQLPLVALTMGLFF
SLYGLFKKKINFDWSTTLFIEALVLTPIALAYLIVKQVTVGELASTVDMTTFMLYLGSAPVTILPLIFYSIALRITNLST
VGLMQYIEPSLQFVLAVVFFGELFDSVKAVTFAFIWVGLLFTIFEGVAKLSKRRKLADQSI

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=288, Percent_Identity=35.0694444444444, Blast_Score=173, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33618; Mature: 33618

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSLYGNLMAALSFVIWGLLPIYYRFLPNASMDELLALRIIGSVPVGFILVLAMTRHMP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
KWSKVWQDKKSLWYTFVASSLMCISWVAFTWALTNNRVIDASLGFFIGPLISVALGVFIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHH
GDKLSKGQFIAILLATIGVLYQVFQYGQLPLVALTMGLFFSLYGLFKKKINFDWSTTLFI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
EALVLTPIALAYLIVKQVTVGELASTVDMTTFMLYLGSAPVTILPLIFYSIALRITNLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHH
VGLMQYIEPSLQFVLAVVFFGELFDSVKAVTFAFIWVGLLFTIFEGVAKLSKRRKLADQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
I
C
>Mature Secondary Structure
MNNSLYGNLMAALSFVIWGLLPIYYRFLPNASMDELLALRIIGSVPVGFILVLAMTRHMP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
KWSKVWQDKKSLWYTFVASSLMCISWVAFTWALTNNRVIDASLGFFIGPLISVALGVFIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHH
GDKLSKGQFIAILLATIGVLYQVFQYGQLPLVALTMGLFFSLYGLFKKKINFDWSTTLFI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
EALVLTPIALAYLIVKQVTVGELASTVDMTTFMLYLGSAPVTILPLIFYSIALRITNLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHH
VGLMQYIEPSLQFVLAVVFFGELFDSVKAVTFAFIWVGLLFTIFEGVAKLSKRRKLADQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]