Click here to switch to the map view.

The map label for this gene is pcaH [H]

Identifier: 156976757

GI number: 156976757

Start: 738955

End: 739527

Strand: Direct

Name: pcaH [H]

Synonym: VIBHAR_05532

Alternate gene names: 156976757

Gene position: 738955-739527 (Clockwise)

Preceding gene: 156976756

Following gene: 156976759

Centisome position: 33.53

GC content: 47.29

Gene sequence:

>573_bases
ATGGAACGACGACACTTTTTAGCGCTGTGGACATTGTTGTTCGCACCCTCTTTAAAAGCGAAAACACCAATGCGACCGAC
GCCAGCACAAACAGAAGGGCCATTTTATCCAGTAGTGAACATTCCTCTTCGTCAAAACTTGATTCTGCAATCAGAGGGCT
TGGTCGGTGAACCTATCGTGTTGCAAGGCAAAGTCGTAGATACAACAGGAAACCCAGTTTCAGGCATCAAGGTAGAAATC
TGGCAATGTGATGGGCAGGGGATTTACGAGCATCCTAAGCAGCCAAATAACGATAAGTTTGATGCTCACTTTGCAGGCTT
TGGCGCAGTCGAAACTCAATCGGATGGTCGCTACTTATTCCAGACTTTGTATCCCGTGCCTTATGCCTCTCGTCCGCCGC
ACATTCACGTCAAGTTGTGGCGTGATAACCAAGAGCTGCTGACCACTCAGTTGTACTTAAAAGGCAATACTGGTGATGAA
TGGTGGGGCGGCAAAGCCCGTGATTCTCTACAGTTTGAAACTATACTATTCGACGGGCGATTAACGGGCGAATTTAACTT
TGTGATTGGCTAG

Upstream 100 bases:

>100_bases
TCTGCAAATGACTCTCTAGCAGGGGCATTTTTTATATTCGTCATGGCAAATCGCTCAAGTTCCACCAAACTTAACTCAAA
ACTTTTCGATTGGTGACATT

Downstream 100 bases:

>100_bases
CTAATCCGGTTAAGCCATTAACTCAACCAATTGCGCTAAGCATTCTTTATCCAGTATTGGATGAGGCTCAACACCCGTTA
CCAGCACAATATCCACGGAA

Product: protocatechuate 3,4-dioxygenase beta chain protein

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MERRHFLALWTLLFAPSLKAKTPMRPTPAQTEGPFYPVVNIPLRQNLILQSEGLVGEPIVLQGKVVDTTGNPVSGIKVEI
WQCDGQGIYEHPKQPNNDKFDAHFAGFGAVETQSDGRYLFQTLYPVPYASRPPHIHVKLWRDNQELLTTQLYLKGNTGDE
WWGGKARDSLQFETILFDGRLTGEFNFVIG

Sequences:

>Translated_190_residues
MERRHFLALWTLLFAPSLKAKTPMRPTPAQTEGPFYPVVNIPLRQNLILQSEGLVGEPIVLQGKVVDTTGNPVSGIKVEI
WQCDGQGIYEHPKQPNNDKFDAHFAGFGAVETQSDGRYLFQTLYPVPYASRPPHIHVKLWRDNQELLTTQLYLKGNTGDE
WWGGKARDSLQFETILFDGRLTGEFNFVIG
>Mature_190_residues
MERRHFLALWTLLFAPSLKAKTPMRPTPAQTEGPFYPVVNIPLRQNLILQSEGLVGEPIVLQGKVVDTTGNPVSGIKVEI
WQCDGQGIYEHPKQPNNDKFDAHFAGFGAVETQSDGRYLFQTLYPVPYASRPPHIHVKLWRDNQELLTTQLYLKGNTGDE
WWGGKARDSLQFETILFDGRLTGEFNFVIG

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 21496; Mature: 21496

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00083 INTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERRHFLALWTLLFAPSLKAKTPMRPTPAQTEGPFYPVVNIPLRQNLILQSEGLVGEPIV
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCEE
LQGKVVDTTGNPVSGIKVEIWQCDGQGIYEHPKQPNNDKFDAHFAGFGAVETQSDGRYLF
EEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEEEE
QTLYPVPYASRPPHIHVKLWRDNQELLTTQLYLKGNTGDEWWGGKARDSLQFETILFDGR
EEECCCCCCCCCCEEEEEEEECCHHEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCE
LTGEFNFVIG
ECCEEEEEEC
>Mature Secondary Structure
MERRHFLALWTLLFAPSLKAKTPMRPTPAQTEGPFYPVVNIPLRQNLILQSEGLVGEPIV
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCEE
LQGKVVDTTGNPVSGIKVEIWQCDGQGIYEHPKQPNNDKFDAHFAGFGAVETQSDGRYLF
EEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEEEE
QTLYPVPYASRPPHIHVKLWRDNQELLTTQLYLKGNTGDEWWGGKARDSLQFETILFDGR
EEECCCCCCCCCCEEEEEEEECCHHEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCE
LTGEFNFVIG
ECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704; 8063101 [H]