Click here to switch to the map view.

The map label for this gene is 156976690

Identifier: 156976690

GI number: 156976690

Start: 679847

End: 680458

Strand: Reverse

Name: 156976690

Synonym: VIBHAR_05465

Alternate gene names: NA

Gene position: 680458-679847 (Counterclockwise)

Preceding gene: 156976691

Following gene: 156976689

Centisome position: 30.87

GC content: 49.67

Gene sequence:

>612_bases
ATGAGCAAAGACTTTACGCATTCAGTGATCATCTTGATCATCACCACCGCTGTTGTGGCTTCCTTCTCTCTTGTAGTGTG
GGTAGTGCCTAACATCCTGCGTACTGACGACATCGCCAAAGGCAGTTTAGCGAAGCCGTTAACCGCGTTGGAGCTTGCTG
GTCGCGATATCTACATCAGCGAAGGTTGCCATGTGTGCCACACGCAGATGGTTCGCCCGCTAGAGCCTGAAATCAAACGT
AACGGACGCGCGAACCAAGAGTCCGATGATATTTACGAGTTCCCTAATTTATGGGGTTCCAAACGAACTGGCCCAGACCT
AACCAATCTTGGACGCAAGTATTCGGACCAATGGCATGTATTACATCTTATCGACCCACGCCAAGTCGTTCCTACATCCA
TCATGCCGGCTTATCCTTGGTTGTTTGAGCAGACATTGTCTGGTAACGCCATTGGTAACAAGATGGAAACGCTCCGTACG
TTAGGCGTGCCCTACACCGACCAAGAGATATCAGACGCGCGATTACAAATACGCGGTAAAACCAAAGCGGAAGCTCTGAT
TCGTTATCTTCAAAGCCTTGGTCAAGACACAGCACAGGAGGTGGCACAATGA

Upstream 100 bases:

>100_bases
TTTGGTGGTGCACTCTTTGTACTCGGCTTGTTCCTGATGGCATTCAACTTGTACAAGACCGTACGCTCTCCGTCTGTACT
AGTCGCGAAGGAGGCATAAG

Downstream 100 bases:

>100_bases
GCACATTCTGGAACTGGTGGGCAATTGCCGCCACGATTGTCTTCTTCATATTGATGGTGTCTGTCATCGTCAAATATTGG
CGTAGCAACCATAAAGCAGA

Product: Cbb3-type cytochrome oxidase

Products: NA

Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit II; Cytochrome C Oxidase Mono-Heme Subunit/FixO; Cytochrome C Oxidase Cbb3-Type Subunit I; Cb-Type Cytochrome C Oxidase Subunit II; Cbb3-Type Cytochrome Oxidase Cytochrome C Subunit; Bifunctional Cbb3-Type Cytochrome C Oxidase Subunit I/II; Cytochrome C Oxidase; Cytochrome C Oxidase Subunit CcoO; Cytochrome Oxidase Subunit; Cytochrome C Oxidase Subunit; Cytochrome-C Oxidase FixO Chain; Cytochrome C Oxidase Mono-Heme Subunit/Fixo; Cytochrome-C Oxidase Subunit II; Bifunctional Cytochrome C Oxidase Subunit SccoN/O; Cytochrome-Cbb3 Oxidase Subunit I; Transmembrane Cytochrome C Oxidase FixO Protein; Cbb3-Type Cytochrome Oxidase; Cbb3-Type Cytochrome C Oxidase Subunit CcoO; Cbb3-Type Cytochrome C Oxidase Subunit I + II; Cytochrome Oxidase; Cytochrome C Oxidase Mono-Heme Subunit; Cytochrome C Oxidase Cbb3-Type; Cytochrome C Oxidase Cbb3-Type Mono-Heme Subunit II; Cytochrome Cbb3 Oxidase Subunit I/III; Cytochrome Oxidase Cytochrome C Subunit; Cytochrome C Oxidase Family Protein; Cytochrome C Oxidase Subunit CcoN; Cytochrome C Oxidase FixO Chain; Cytochrome C Oxidase Cbb3-Type Subunit I/Mono-Heme Subunit; Cytochrome C Oxidase Mono-Heme Subunit/FixO Superfamily; Cytochrome-Cbb3 Oxidase Subunit II; Cytochrome C Family Protein; Cytochrome C Oxidase CcoO Subunit; Cbb3-Type Cytochrome C Oxidase Subunits CcoN/CcoO; Cytochrome C Oxidase Cbb3-Type Subunit I And II

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSKDFTHSVIILIITTAVVASFSLVVWVVPNILRTDDIAKGSLAKPLTALELAGRDIYISEGCHVCHTQMVRPLEPEIKR
NGRANQESDDIYEFPNLWGSKRTGPDLTNLGRKYSDQWHVLHLIDPRQVVPTSIMPAYPWLFEQTLSGNAIGNKMETLRT
LGVPYTDQEISDARLQIRGKTKAEALIRYLQSLGQDTAQEVAQ

Sequences:

>Translated_203_residues
MSKDFTHSVIILIITTAVVASFSLVVWVVPNILRTDDIAKGSLAKPLTALELAGRDIYISEGCHVCHTQMVRPLEPEIKR
NGRANQESDDIYEFPNLWGSKRTGPDLTNLGRKYSDQWHVLHLIDPRQVVPTSIMPAYPWLFEQTLSGNAIGNKMETLRT
LGVPYTDQEISDARLQIRGKTKAEALIRYLQSLGQDTAQEVAQ
>Mature_202_residues
SKDFTHSVIILIITTAVVASFSLVVWVVPNILRTDDIAKGSLAKPLTALELAGRDIYISEGCHVCHTQMVRPLEPEIKRN
GRANQESDDIYEFPNLWGSKRTGPDLTNLGRKYSDQWHVLHLIDPRQVVPTSIMPAYPWLFEQTLSGNAIGNKMETLRTL
GVPYTDQEISDARLQIRGKTKAEALIRYLQSLGQDTAQEVAQ

Specific function: Unknown

COG id: COG2993

COG function: function code C; Cbb3-type cytochrome oxidase, cytochrome c subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22756; Mature: 22625

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDFTHSVIILIITTAVVASFSLVVWVVPNILRTDDIAKGSLAKPLTALELAGRDIYIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCEEEEC
EGCHVCHTQMVRPLEPEIKRNGRANQESDDIYEFPNLWGSKRTGPDLTNLGRKYSDQWHV
CCCHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEE
LHLIDPRQVVPTSIMPAYPWLFEQTLSGNAIGNKMETLRTLGVPYTDQEISDARLQIRGK
EEEECCCHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCC
TKAEALIRYLQSLGQDTAQEVAQ
HHHHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure 
SKDFTHSVIILIITTAVVASFSLVVWVVPNILRTDDIAKGSLAKPLTALELAGRDIYIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCEEEEC
EGCHVCHTQMVRPLEPEIKRNGRANQESDDIYEFPNLWGSKRTGPDLTNLGRKYSDQWHV
CCCHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEE
LHLIDPRQVVPTSIMPAYPWLFEQTLSGNAIGNKMETLRTLGVPYTDQEISDARLQIRGK
EEEECCCHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCC
TKAEALIRYLQSLGQDTAQEVAQ
HHHHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA