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The map label for this gene is yahB [H]

Identifier: 156976644

GI number: 156976644

Start: 639991

End: 640869

Strand: Reverse

Name: yahB [H]

Synonym: VIBHAR_05418

Alternate gene names: 156976644

Gene position: 640869-639991 (Counterclockwise)

Preceding gene: 156976646

Following gene: 156976643

Centisome position: 29.08

GC content: 46.42

Gene sequence:

>879_bases
ATGAACTTATCGCAAGTTGAAGCCTTTTGTACCATTGCCGAATATGGCTCCGTATCGGAGGCCGCGCGTCAACTCGACTG
CAACCGTACTAAGCTCAGTATGGCGATAAAAGCGCTTGAAAAAGACTTAGACGTCGAGCTATTTACTCGTACGGGCAATC
AACTCACGCTCTCGGAAGCGGGGAAAGCCATTTTTAAAGACTGCGAAAACTTGCTAGTAACCGCACAGCGAATCAAAAAG
ACCTGCGCTCAAGTTTCTGATGGCTTCAACGCTGAGGTATGGGTGGCGCGTGATGATTCACTACCAGATGAATTGTGGCA
AGAACTCTCGCATACGCTGAATAACCGCTTCCCTTCCACTACATTCAACCTGATTCTCGCATCCAGTGGTGACTTGGCTA
ACTTAGTCAGCACCCAACAGGTCGACTTTGCGTTTGGTGTCGATTATGAACGAGTAGATGATCCGCACATCGTTTATAAC
CCACTTGGTAAAATCCGCATGATGTCGGTCTGCGGCTTCGATCATCAACTCAGTAAAATGCGTCGCGTAACCGATGAAGA
CCTGCGTAACCAGATGCAAGCGTTGATGGTGTACTTGAATGAAAAAGACAACCCGGAGCTACACCCCTTTTCTACTCGAT
ATATTGGTTTCTCCAGCTTTGACTACATGCTGAACACCATTTTGGAAGAAGATGCATGGGGTGTATTACCAGAGCCATTG
ATACGACACTATTTGAGACATCAGAAACTTGCGGTGATCAAACACACCTATGGTTTGACGCAAGAAGACTACTGCATGTT
CGTACCAAACGGACAAACAGAGCACCCTGCAATGAGTTGGCTGGCTGATAAATTAAGCGAGTATTTATTCGACTTCTAA

Upstream 100 bases:

>100_bases
TGGCGAATCCGCGTTTTTTTCGATAATCTTTCTAGGCGTCAGTACGTTCATTCGTCTACGTTATCGATTCTCATCATTTT
AGTTTAGGTCTTTTTTAATC

Downstream 100 bases:

>100_bases
AAATATTGCAGTGAGCGCCAATTATATTGACAGTAAGATTTAAATATAAACCCTTGAAAAATAAAAATATACAACAGAAC
AAGCATTTTATCGTTTAAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNLSQVEAFCTIAEYGSVSEAARQLDCNRTKLSMAIKALEKDLDVELFTRTGNQLTLSEAGKAIFKDCENLLVTAQRIKK
TCAQVSDGFNAEVWVARDDSLPDELWQELSHTLNNRFPSTTFNLILASSGDLANLVSTQQVDFAFGVDYERVDDPHIVYN
PLGKIRMMSVCGFDHQLSKMRRVTDEDLRNQMQALMVYLNEKDNPELHPFSTRYIGFSSFDYMLNTILEEDAWGVLPEPL
IRHYLRHQKLAVIKHTYGLTQEDYCMFVPNGQTEHPAMSWLADKLSEYLFDF

Sequences:

>Translated_292_residues
MNLSQVEAFCTIAEYGSVSEAARQLDCNRTKLSMAIKALEKDLDVELFTRTGNQLTLSEAGKAIFKDCENLLVTAQRIKK
TCAQVSDGFNAEVWVARDDSLPDELWQELSHTLNNRFPSTTFNLILASSGDLANLVSTQQVDFAFGVDYERVDDPHIVYN
PLGKIRMMSVCGFDHQLSKMRRVTDEDLRNQMQALMVYLNEKDNPELHPFSTRYIGFSSFDYMLNTILEEDAWGVLPEPL
IRHYLRHQKLAVIKHTYGLTQEDYCMFVPNGQTEHPAMSWLADKLSEYLFDF
>Mature_292_residues
MNLSQVEAFCTIAEYGSVSEAARQLDCNRTKLSMAIKALEKDLDVELFTRTGNQLTLSEAGKAIFKDCENLLVTAQRIKK
TCAQVSDGFNAEVWVARDDSLPDELWQELSHTLNNRFPSTTFNLILASSGDLANLVSTQQVDFAFGVDYERVDDPHIVYN
PLGKIRMMSVCGFDHQLSKMRRVTDEDLRNQMQALMVYLNEKDNPELHPFSTRYIGFSSFDYMLNTILEEDAWGVLPEPL
IRHYLRHQKLAVIKHTYGLTQEDYCMFVPNGQTEHPAMSWLADKLSEYLFDF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=286, Percent_Identity=24.1258741258741, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786713, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693105, Length=189, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33430; Mature: 33430

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSQVEAFCTIAEYGSVSEAARQLDCNRTKLSMAIKALEKDLDVELFTRTGNQLTLSEA
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHH
GKAIFKDCENLLVTAQRIKKTCAQVSDGFNAEVWVARDDSLPDELWQELSHTLNNRFPST
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
TFNLILASSGDLANLVSTQQVDFAFGVDYERVDDPHIVYNPLGKIRMMSVCGFDHQLSKM
EEEEEEECCCCHHHHHHHHHCCCEECCCHHHCCCCCEEECCCCCEEEHHHCCCHHHHHHH
RRVTDEDLRNQMQALMVYLNEKDNPELHPFSTRYIGFSSFDYMLNTILEEDAWGVLPEPL
HHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCHHH
IRHYLRHQKLAVIKHTYGLTQEDYCMFVPNGQTEHPAMSWLADKLSEYLFDF
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLSQVEAFCTIAEYGSVSEAARQLDCNRTKLSMAIKALEKDLDVELFTRTGNQLTLSEA
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHH
GKAIFKDCENLLVTAQRIKKTCAQVSDGFNAEVWVARDDSLPDELWQELSHTLNNRFPST
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
TFNLILASSGDLANLVSTQQVDFAFGVDYERVDDPHIVYNPLGKIRMMSVCGFDHQLSKM
EEEEEEECCCCHHHHHHHHHCCCEECCCHHHCCCCCEEECCCCCEEEHHHCCCHHHHHHH
RRVTDEDLRNQMQALMVYLNEKDNPELHPFSTRYIGFSSFDYMLNTILEEDAWGVLPEPL
HHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCHHH
IRHYLRHQKLAVIKHTYGLTQEDYCMFVPNGQTEHPAMSWLADKLSEYLFDF
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]