| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156976581
Identifier: 156976581
GI number: 156976581
Start: 585640
End: 586566
Strand: Reverse
Name: 156976581
Synonym: VIBHAR_05355
Alternate gene names: NA
Gene position: 586566-585640 (Counterclockwise)
Preceding gene: 156976584
Following gene: 156976580
Centisome position: 26.61
GC content: 47.14
Gene sequence:
>927_bases ATGGCACTTGGATACGCTGCAATCATTACAACGCTTTTTCTTTGGTCAGGATTTTTTCTCTCTCTGCGCGGAGGCGCAAT ATCAGATCTTCAGCCTGCAGACATCGCTTTAGCACGCTTTCTTATTCCTGCCGCGGTATTACTGCCGTTTGTGCTCAAGT CCATGAACCAAATACGCGCGGTGCCAAGTAAGTATTTACTCGGCATCATTGTAGGCAGTGGTCTGCCTTATCTTCTGATT GCAGGTACTGCGATGCACTATGCGCCTGTTTCTCATGGCAGTGCTTTAATTCCAGGGACGTTACCGCTATTTGTCTCTGC TATCGCTGTCTTGTGTTATCAGCAACCATTGAGTCAACATCGCGTTATTGGCTTATCAGCCGTATTACTTGGCATTCTGG TGTTTTTACTGTCCAACTTAGGGGCCGAATATAACTGGCTACAACTTAAGGGACACAGCTTATTTTTGGTTGGCAGCCTG ATGTGGGCAATCTTTACGATTAGTGCGCGCGTGGCGAACTTAAACGCCTATGTTTGCGCAGGTTTTGTATCGGTCATTTC TTTTGCCATGCTCGTTATCGCCGTGGGGTTTGGTTGGCTTGATAGCTACCTTGCGACAACGTCTATCAAGCAATGGCCTT GGAATGAATTAGTTGGTCATCTACTGCTGCAAGGGGTTGGCGCAGGTCTGATTGCCTCTTTCACCTTTCTTTATGCCGTT AGAACGATAGGAGCGGAAGCCAGTGCTGCATTTGGGTCATTAACGCCCGTATTGGCAACTTTATTAGCGATTCCAGTCTT TAACGAACAACCTGATACTCTCACTTGGTGTGCGTTGCTGCTTGTCACCTGTGGCAGTATCGTCGCAAGTAATGTCTTGA TGAGACAAGATCCTAGCCAAAATTATCGGCCCCCTGTTCACAGATAA
Upstream 100 bases:
>100_bases ATTCACTAAGTTTAAGTTTTATTCGGTCATATTTTGCCACCATTGAGCGTCACTTTCATTCAATAATTAACACATCATTT ACAAACACTCGGAATGCCTT
Downstream 100 bases:
>100_bases GAACAAAAATGCATAACTTTTCATCTCTCCTATTGAAAGCAAAAACAGCGATTTGATAACCTACTGCGATAAGAATTTAA AACGTCAGAAGTTATGCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane; Permease Protein; Permease; Transmembrane Protein; Permease Of Drug Metabolite Transporter Superfamily; Integral Membrane Domain Protein; Permease DMT Superfamily
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MALGYAAIITTLFLWSGFFLSLRGGAISDLQPADIALARFLIPAAVLLPFVLKSMNQIRAVPSKYLLGIIVGSGLPYLLI AGTAMHYAPVSHGSALIPGTLPLFVSAIAVLCYQQPLSQHRVIGLSAVLLGILVFLLSNLGAEYNWLQLKGHSLFLVGSL MWAIFTISARVANLNAYVCAGFVSVISFAMLVIAVGFGWLDSYLATTSIKQWPWNELVGHLLLQGVGAGLIASFTFLYAV RTIGAEASAAFGSLTPVLATLLAIPVFNEQPDTLTWCALLLVTCGSIVASNVLMRQDPSQNYRPPVHR
Sequences:
>Translated_308_residues MALGYAAIITTLFLWSGFFLSLRGGAISDLQPADIALARFLIPAAVLLPFVLKSMNQIRAVPSKYLLGIIVGSGLPYLLI AGTAMHYAPVSHGSALIPGTLPLFVSAIAVLCYQQPLSQHRVIGLSAVLLGILVFLLSNLGAEYNWLQLKGHSLFLVGSL MWAIFTISARVANLNAYVCAGFVSVISFAMLVIAVGFGWLDSYLATTSIKQWPWNELVGHLLLQGVGAGLIASFTFLYAV RTIGAEASAAFGSLTPVLATLLAIPVFNEQPDTLTWCALLLVTCGSIVASNVLMRQDPSQNYRPPVHR >Mature_307_residues ALGYAAIITTLFLWSGFFLSLRGGAISDLQPADIALARFLIPAAVLLPFVLKSMNQIRAVPSKYLLGIIVGSGLPYLLIA GTAMHYAPVSHGSALIPGTLPLFVSAIAVLCYQQPLSQHRVIGLSAVLLGILVFLLSNLGAEYNWLQLKGHSLFLVGSLM WAIFTISARVANLNAYVCAGFVSVISFAMLVIAVGFGWLDSYLATTSIKQWPWNELVGHLLLQGVGAGLIASFTFLYAVR TIGAEASAAFGSLTPVLATLLAIPVFNEQPDTLTWCALLLVTCGSIVASNVLMRQDPSQNYRPPVHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32931; Mature: 32800
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGYAAIITTLFLWSGFFLSLRGGAISDLQPADIALARFLIPAAVLLPFVLKSMNQIRA CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPSKYLLGIIVGSGLPYLLIAGTAMHYAPVSHGSALIPGTLPLFVSAIAVLCYQQPLSQH CHHHHHHHHHHHCCCCEEHHHCCHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHH RVIGLSAVLLGILVFLLSNLGAEYNWLQLKGHSLFLVGSLMWAIFTISARVANLNAYVCA HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GFVSVISFAMLVIAVGFGWLDSYLATTSIKQWPWNELVGHLLLQGVGAGLIASFTFLYAV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH RTIGAEASAAFGSLTPVLATLLAIPVFNEQPDTLTWCALLLVTCGSIVASNVLMRQDPSQ HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC NYRPPVHR CCCCCCCC >Mature Secondary Structure ALGYAAIITTLFLWSGFFLSLRGGAISDLQPADIALARFLIPAAVLLPFVLKSMNQIRA CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VPSKYLLGIIVGSGLPYLLIAGTAMHYAPVSHGSALIPGTLPLFVSAIAVLCYQQPLSQH CHHHHHHHHHHHCCCCEEHHHCCHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHH RVIGLSAVLLGILVFLLSNLGAEYNWLQLKGHSLFLVGSLMWAIFTISARVANLNAYVCA HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GFVSVISFAMLVIAVGFGWLDSYLATTSIKQWPWNELVGHLLLQGVGAGLIASFTFLYAV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH RTIGAEASAAFGSLTPVLATLLAIPVFNEQPDTLTWCALLLVTCGSIVASNVLMRQDPSQ HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC NYRPPVHR CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA