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The map label for this gene is exbB1 [H]

Identifier: 156976470

GI number: 156976470

Start: 494252

End: 494950

Strand: Reverse

Name: exbB1 [H]

Synonym: VIBHAR_05243

Alternate gene names: 156976470

Gene position: 494950-494252 (Counterclockwise)

Preceding gene: 156976471

Following gene: 156976469

Centisome position: 22.46

GC content: 47.07

Gene sequence:

>699_bases
ATGGAACAGCTACAACATTTACAAACCCAATTTGGTCTTATGACTTGGCCTTTAATGATTTGCTCTGCACTTACAGTCAT
GATCATTGCGGAAAGACTCTTTCAAGTATTCATTAGCTTAGGCGTGGGGAAGCGTGCAATTCGTCAAAAGCTGACCAATC
TTGATCCAACCAACAACAAAGATATTGAAGCGCTAGCGGACGAGCTTTCTGGCAAACGCCCTCTACTCTATCGCGGTGTC
GCTATGTTGCTCGCTCACCACTCTTTTTCTAAATCATTACGTGAGGATGCCGCAGGCATTTGGCTTCAAGAAAAGCGTCA
TCAGCTGCACTCAGGCCTTCGCCTACTGACGTTGATTGGCGTGATCAGCCCTCTGATTGGTCTGTTAGGAACAGTACTTG
GCCTAATCGACATGTTTAAAGGTATTGCCTCTTCCACGGGCAACATCACACCAAATGATTTGGCTGATGGTCTAGGCCTT
GCGATGCGCACGACAGCAGCAGGTTTGATCATTGCATTACCAGCCATTTCTGGCGCGCAGCTTATTGGCCTTTGGGCTGA
TCGTGTTATCGCTAAGCTTGAGCATACGCTCAACTATGTGAACCTTTGGCTTGAAGGCATTTCTCTGCAACACGTTTCTC
CAGAAAGCCACAAAGAAATCGCGACTGTGGCAAATCATGTTGAAGCGAGAAGCTCATGA

Upstream 100 bases:

>100_bases
TACGAGCCATCAAACAATGGCAATTCTCTCCTCATATTTCTGGTGGGCAAAAAGTTGCTCACCGAGTTCAAATCCCAGTT
CGTTTTAAGTTGGATGGATA

Downstream 100 bases:

>100_bases
TTAAGGCACCGCAAGACAATCACAGTCACGGTTTAACGCCAGACTTAACTCCGCTGCTCGATATCATTTTCATCGTGATG
GTGTTTTTGATGCTCACGGC

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MEQLQHLQTQFGLMTWPLMICSALTVMIIAERLFQVFISLGVGKRAIRQKLTNLDPTNNKDIEALADELSGKRPLLYRGV
AMLLAHHSFSKSLREDAAGIWLQEKRHQLHSGLRLLTLIGVISPLIGLLGTVLGLIDMFKGIASSTGNITPNDLADGLGL
AMRTTAAGLIIALPAISGAQLIGLWADRVIAKLEHTLNYVNLWLEGISLQHVSPESHKEIATVANHVEARSS

Sequences:

>Translated_232_residues
MEQLQHLQTQFGLMTWPLMICSALTVMIIAERLFQVFISLGVGKRAIRQKLTNLDPTNNKDIEALADELSGKRPLLYRGV
AMLLAHHSFSKSLREDAAGIWLQEKRHQLHSGLRLLTLIGVISPLIGLLGTVLGLIDMFKGIASSTGNITPNDLADGLGL
AMRTTAAGLIIALPAISGAQLIGLWADRVIAKLEHTLNYVNLWLEGISLQHVSPESHKEIATVANHVEARSS
>Mature_232_residues
MEQLQHLQTQFGLMTWPLMICSALTVMIIAERLFQVFISLGVGKRAIRQKLTNLDPTNNKDIEALADELSGKRPLLYRGV
AMLLAHHSFSKSLREDAAGIWLQEKRHQLHSGLRLLTLIGVISPLIGLLGTVLGLIDMFKGIASSTGNITPNDLADGLGL
AMRTTAAGLIIALPAISGAQLIGLWADRVIAKLEHTLNYVNLWLEGISLQHVSPESHKEIATVANHVEARSS

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates. Protects exbD from proteolytic degradation and functionally stabilizes tonB [H]

COG id: COG0811

COG function: function code U; Biopolymer transport proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbB/tolQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 25290; Mature: 25290

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLQHLQTQFGLMTWPLMICSALTVMIIAERLFQVFISLGVGKRAIRQKLTNLDPTNNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
DIEALADELSGKRPLLYRGVAMLLAHHSFSKSLREDAAGIWLQEKRHQLHSGLRLLTLIG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VISPLIGLLGTVLGLIDMFKGIASSTGNITPNDLADGLGLAMRTTAAGLIIALPAISGAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LIGLWADRVIAKLEHTLNYVNLWLEGISLQHVSPESHKEIATVANHVEARSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQLQHLQTQFGLMTWPLMICSALTVMIIAERLFQVFISLGVGKRAIRQKLTNLDPTNNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
DIEALADELSGKRPLLYRGVAMLLAHHSFSKSLREDAAGIWLQEKRHQLHSGLRLLTLIG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VISPLIGLLGTVLGLIDMFKGIASSTGNITPNDLADGLGLAMRTTAAGLIIALPAISGAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LIGLWADRVIAKLEHTLNYVNLWLEGISLQHVSPESHKEIATVANHVEARSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]