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The map label for this gene is gfcE [H]

Identifier: 156976432

GI number: 156976432

Start: 461355

End: 461888

Strand: Reverse

Name: gfcE [H]

Synonym: VIBHAR_05205

Alternate gene names: 156976432

Gene position: 461888-461355 (Counterclockwise)

Preceding gene: 156976433

Following gene: 156976431

Centisome position: 20.96

GC content: 43.26

Gene sequence:

>534_bases
ATGAACTTACTAGCAACGTTATTTAGCTTAGTACTTGTGCTTCTTAGCACACCTTCTTTTGCCAGTGCCAATGAGCAAGA
TTACTTACTCGATACTGGTGATACCATCTCGGTTCAAGTCTACGGTGAGGAAGATCTTTCCATAAAGAACATCCTGATCA
CTTCAGACGGCTATTTTGATTATCCTTACTTAGGGCGAATTAAAGCCATCAATAAGACCCCAAAACAGCTCAAGTATGAG
ATTGAAACAGGACTGAAAGGTGACTACCTAATCAATCCTAAAGTAATGGTGGCAATCAATAGCTTCCGCCTTTTCTACGT
AAATGGTGAAGTCCGAAAGCCTGGTGGATTCGAATACCAGCCGGGATTGACGATTGAAAAAGCCATCGCGCTAGCTGGAG
GCTTAACGGATCGAGCGTCCCGCAAGAGCATTAATCTTACTCAACACGCAACAGGTAATACGGTTGAAAGCGTCAGTATG
CAACGCTCTGTAGAACCTGGCGACATTGTATTTATCGATCAGAGCTTCTTCTAA

Upstream 100 bases:

>100_bases
TTGGCGCTATCTGGATAAAGATTCTGATTGGCAAGGCTACAGCTTCGAGCAAAACATCTGGTCTCTTAGTGCTCGATTCT
CTTTGTAATAAGGAATATGA

Downstream 100 bases:

>100_bases
TGACAGGCAATTCAATGAACGAAACTCATTCTACTCAAGCCCCTACGAATCAAGTCCCCCTGATTCGTTTTGGGCATCAT
TTTAGAACCCTTAAGAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein E homolog [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MNLLATLFSLVLVLLSTPSFASANEQDYLLDTGDTISVQVYGEEDLSIKNILITSDGYFDYPYLGRIKAINKTPKQLKYE
IETGLKGDYLINPKVMVAINSFRLFYVNGEVRKPGGFEYQPGLTIEKAIALAGGLTDRASRKSINLTQHATGNTVESVSM
QRSVEPGDIVFIDQSFF

Sequences:

>Translated_177_residues
MNLLATLFSLVLVLLSTPSFASANEQDYLLDTGDTISVQVYGEEDLSIKNILITSDGYFDYPYLGRIKAINKTPKQLKYE
IETGLKGDYLINPKVMVAINSFRLFYVNGEVRKPGGFEYQPGLTIEKAIALAGGLTDRASRKSINLTQHATGNTVESVSM
QRSVEPGDIVFIDQSFF
>Mature_177_residues
MNLLATLFSLVLVLLSTPSFASANEQDYLLDTGDTISVQVYGEEDLSIKNILITSDGYFDYPYLGRIKAINKTPKQLKYE
IETGLKGDYLINPKVMVAINSFRLFYVNGEVRKPGGFEYQPGLTIEKAIALAGGLTDRASRKSINLTQHATGNTVESVSM
QRSVEPGDIVFIDQSFF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=205, Percent_Identity=32.6829268292683, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1788376, Length=178, Percent_Identity=31.4606741573034, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 19586; Mature: 19586

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLATLFSLVLVLLSTPSFASANEQDYLLDTGDTISVQVYGEEDLSIKNILITSDGYFD
CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEEECCCCCC
YPYLGRIKAINKTPKQLKYEIETGLKGDYLINPKVMVAINSFRLFYVNGEVRKPGGFEYQ
CCCCCEEEECCCCHHHEEEEECCCCCCCEEECCEEEEEEEEEEEEEEECEEECCCCCCCC
PGLTIEKAIALAGGLTDRASRKSINLTQHATGNTVESVSMQRSVEPGDIVFIDQSFF
CCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCC
>Mature Secondary Structure
MNLLATLFSLVLVLLSTPSFASANEQDYLLDTGDTISVQVYGEEDLSIKNILITSDGYFD
CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEEECCCCCC
YPYLGRIKAINKTPKQLKYEIETGLKGDYLINPKVMVAINSFRLFYVNGEVRKPGGFEYQ
CCCCCEEEECCCCHHHEEEEECCCCCCCEEECCEEEEEEEEEEEEEEECEEECCCCCCCC
PGLTIEKAIALAGGLTDRASRKSINLTQHATGNTVESVSMQRSVEPGDIVFIDQSFF
CCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]