Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 156976216

GI number: 156976216

Start: 243685

End: 244614

Strand: Reverse

Name: ltrA [H]

Synonym: VIBHAR_04988

Alternate gene names: 156976216

Gene position: 244614-243685 (Counterclockwise)

Preceding gene: 156976217

Following gene: 156976209

Centisome position: 11.1

GC content: 48.49

Gene sequence:

>930_bases
ATGGTTAACCCAAAACTTATCGCCCTACTCCCTGATCTTGCTTCGTTTATCTTAGTGGTAAATGAAGGTAGCTTTACTGC
TGCCGCCAAACAACTCGGTGTGACACCGTCAGCGCTTAGTAAGCTGATCACGCGCCTAGAGCAAGCACTCTCAGTAAAAT
TGTTTGAGCGCACCACTCGCAAATTGATCATCACGCAAGCAGGGCAAAAAGTTTACGACCAAAGCATTGCCATGGTAAAC
GCGGCTCAGCAAGCGGTTGAATTGTCGGCGGAAGATCATGCCGAGCCCACTGGAGCTCTCACAGTGGCGGCTCCCGAAGC
GTTTCTTAATTCGGTGCTGCAACCATTTGTGCTGCCATTTCTAGACCGCTATCCAAATATACAGCTCAAACTGCGCGCTG
CCGATGGTGAGATTGATCTGTTTCGCCAAGGCATCGATGTTGCGTTTAAGCTCACCGACAAACCCGATGAGAATCTGGTA
CTCAAAGAGATCAGCAAGACCAATTTGGTTTTGTGCGCTTCTCCAGATTACCTAGCCAAACACGGCATGCCAGCGCACCC
AACCGAGCTTGAGCAGCACGACTGTATTTACCTTGCAGAGAACGACAAAGACAACATCTGGTCATTCTTCAAAGAGGAAG
CGTTCCACTCGATTGCAGTGAGTGGCCGTTATGCCGTCAACCACTCTCAAATGCGCTTAAATGGCGTCAAGTCCGGCTTA
GGAATTGGGATCTTTCACGACTTCGTGATTAAAGACGCGTTAGAACAAGGTGAGGTAGTGGAAGTTTTACCGGATTGGAT
GATAAAAAGTAATTACCACGGTGCTATCGCGATGCAGTATGCACAAACCAAGTATATGCCTGCTCGCCTGCGTGTTTTTA
TCGACTTCGTAAAGGAGCATTTAGTCTCCGAGGACACTAACCATGCTTGA

Upstream 100 bases:

>100_bases
CGTTTTTGACAAAATATCACTAAAGCGAGACGAGCACACTTGAACCATGTTGAGTCGTGCAAGACAATATCTCTATTCAT
TTGCGCACCACTGACTATTT

Downstream 100 bases:

>100_bases
AGAGGCTAACCATTTTTGAAGAGACGAACCATGTTTAAGGCCATTCATCACGTTGCGATCATTTGCAGTGATTACCCAAG
GTCAAAACGCTTTTACACTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MVNPKLIALLPDLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVYDQSIAMVN
AAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLDRYPNIQLKLRAADGEIDLFRQGIDVAFKLTDKPDENLV
LKEISKTNLVLCASPDYLAKHGMPAHPTELEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGRYAVNHSQMRLNGVKSGL
GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKEHLVSEDTNHA

Sequences:

>Translated_309_residues
MVNPKLIALLPDLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVYDQSIAMVN
AAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLDRYPNIQLKLRAADGEIDLFRQGIDVAFKLTDKPDENLV
LKEISKTNLVLCASPDYLAKHGMPAHPTELEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGRYAVNHSQMRLNGVKSGL
GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKEHLVSEDTNHA
>Mature_309_residues
MVNPKLIALLPDLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVYDQSIAMVN
AAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLDRYPNIQLKLRAADGEIDLFRQGIDVAFKLTDKPDENLV
LKEISKTNLVLCASPDYLAKHGMPAHPTELEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGRYAVNHSQMRLNGVKSGL
GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKEHLVSEDTNHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=28.8079470198675, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=29.3103448275862, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787128, Length=301, Percent_Identity=30.8970099667774, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=30.0341296928328, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=26.1904761904762, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=26.027397260274, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=24.3243243243243, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=24.1721854304636, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790011, Length=282, Percent_Identity=26.241134751773, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082132, Length=304, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789173, Length=249, Percent_Identity=26.1044176706827, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788481, Length=308, Percent_Identity=24.3506493506494, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=34, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=29.5081967213115, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786448, Length=122, Percent_Identity=31.9672131147541, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=28.3783783783784, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34316; Mature: 34316

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNPKLIALLPDLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTR
CCCCEEEHHHHHHHEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLIITQAGQKVYDQSIAMVNAAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPF
HEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
LDRYPNIQLKLRAADGEIDLFRQGIDVAFKLTDKPDENLVLKEISKTNLVLCASPDYLAK
HHCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCEEEEECCCHHHH
HGMPAHPTELEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGRYAVNHSQMRLNGVKSGL
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEECCEEEECCCHHEEHHHCCCC
GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKEH
CHHHHHHHHHHHHHHCCCEEECCHHHHHCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHH
LVSEDTNHA
HHCCCCCCC
>Mature Secondary Structure
MVNPKLIALLPDLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTR
CCCCEEEHHHHHHHEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLIITQAGQKVYDQSIAMVNAAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPF
HEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
LDRYPNIQLKLRAADGEIDLFRQGIDVAFKLTDKPDENLVLKEISKTNLVLCASPDYLAK
HHCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCEEEEECCCHHHH
HGMPAHPTELEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGRYAVNHSQMRLNGVKSGL
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEECCEEEECCCHHEEHHHCCCC
GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKEH
CHHHHHHHHHHHHHHCCCEEECCHHHHHCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHH
LVSEDTNHA
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]