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The map label for this gene is fliR [H]

Identifier: 156976194

GI number: 156976194

Start: 222270

End: 223046

Strand: Reverse

Name: fliR [H]

Synonym: VIBHAR_04965

Alternate gene names: 156976194

Gene position: 223046-222270 (Counterclockwise)

Preceding gene: 156976195

Following gene: 156976193

Centisome position: 10.12

GC content: 49.29

Gene sequence:

>777_bases
ATGGCGATCACGTTTGCGGAACTGTCTGTGATTCTAGGTCAGCTTTGGTGGCCATTTTTTCGCGTCGGTGCCGTGTTCAT
TTCCATGCCATTTTTTGGTGACGCGTTGATTCCAGTCTGGGTTCGCAGCTTGCTTGCCCTCTCAATTGTGGTGATCACTG
CGCCACTAATGCCACCGATGCCAGAAGTCGAACTGTTCTCAATGACCTCGCTTTTCTTAGCATTCGAGCAAGCGATATGG
GGTCTGATGTTCGGCTTAATCCTGCACATGTTATTCAATGTTTTCACCATGCTCGGCCAGACTATCTCGTTACAAATGGG
CTTGGGTATGGCCGTGATGAACGATCCGGTTAACGGTTTGTCCGTGGCAATTCTCGGTCGCATGTTCCTTATCTTTTCCA
CTTTGCTGTTTCTTGCGCTTGAAGGGCATTTACTGGTTATCGATATCGTCATTCAAAGCTTTGTCATTTGGCCTGTAGGC
TCCGGTATCACCGCCCTGTCTTTGCAAGGCGTCGTGAATATCTTTGGGTGGATGTTTGCTTCCGCACTTGCCTTAGCATT
ACCAGCGATCGTTTCTATGCTGCTCGCCAACATCAGCTTTGGTGTGATGAACCGAGCCGCGCCCTCTCTAAACGTTTATG
CACTGGGCTTCCCGATGACCATGCTGTTAGGTTTGTTCAGCGTGTTGATCTCTGTTTCTGGCGTGCCTAGTCGTTATACC
GCGTTAGTCCACGACACCATTCGCTTCTTAAATAACTTTATGTTGGGGGGCGCATGA

Upstream 100 bases:

>100_bases
TCACGCTGCTGATGGTGATTTTTGCAGGCCATTGGATGCTACGAAAAATCATGGAGCTGTTTGATTTCTTGTTCCATAAC
ATACCGGGAATGATCGGCTA

Downstream 100 bases:

>100_bases
GCGAACAGTCGTCTCAAGACAAAACCGAGAAAGCCTCCCCCCAGAAGGTAAAAAAAGCACGTCAAGAAGGGCAAATTCCT
CGTGCAAAAGAGTTCACTAC

Product: flagellar biosynthesis pathway, component FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAITFAELSVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMTSLFLAFEQAIW
GLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGRMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVG
SGITALSLQGVVNIFGWMFASALALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT
ALVHDTIRFLNNFMLGGA

Sequences:

>Translated_258_residues
MAITFAELSVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMTSLFLAFEQAIW
GLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGRMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVG
SGITALSLQGVVNIFGWMFASALALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT
ALVHDTIRFLNNFMLGGA
>Mature_257_residues
AITFAELSVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMTSLFLAFEQAIWG
LMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGRMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGS
GITALSLQGVVNIFGWMFASALALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTA
LVHDTIRFLNNFMLGGA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=211, Percent_Identity=32.2274881516588, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28027; Mature: 27896

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITFAELSVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PEVELFSMTSLFLAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHCCCCCHH
SVAILGRMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGSGITALSLQGVVNIFGWMFA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
SALALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHH
ALVHDTIRFLNNFMLGGA
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AITFAELSVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPM
EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PEVELFSMTSLFLAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHCCCCCHH
SVAILGRMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGSGITALSLQGVVNIFGWMFA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
SALALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHH
ALVHDTIRFLNNFMLGGA
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]