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The map label for this gene is gbpA

Identifier: 156975969

GI number: 156975969

Start: 10870

End: 12333

Strand: Reverse

Name: gbpA

Synonym: VIBHAR_04739

Alternate gene names: 156975969

Gene position: 12333-10870 (Counterclockwise)

Preceding gene: 156975970

Following gene: 156975968

Centisome position: 0.56

GC content: 46.52

Gene sequence:

>1464_bases
ATGAAAAAACTTCCTAATAAATCTCTTATCGCTTTAGCTCTATTGAGTGTCAGTGGCGCAAGCTTCGGTCACGGCTACGT
TTCAGCATACGAAAACGGCGTTGCAGAAGGCCGCGCTACTTTATGTAGGGTCCCTGCTAACGATACAAATGAGAAAAACA
CCAACTGCGGTGGAATTGAATATGAACCACAAAGCGTCGAAGGTCCAGATGGCTTCCCAGAGACAGGCCCACGAGATGGA
AAGATTGCCAGTGCAGAAAATAGTTTAGCTGCTGCTTTAGATGAACAAACAGCCGATCGCTGGGTTAAACGCCCTATTCA
GTCAGGTAATCAGCACTTTGAATGGAATTTTACTGCTAACCATATCACCAAAGACTGGAAATACTATATCACTAAAGCTG
ACTGGAACCCTAATCAACCACTGGCTCGTGACTCGTTTGACCTAAACCCTTTCTGTGTGGTCGACGGCGGAATGGTTAAA
CCACCAATGCGTGTTAGCCATCTATGTAACGTCCCTGAGCGTGAAGGTTACCAAGTTATCCTAGCGGTATGGGATGTGGG
CGACACTGCGGCTTCTTTCTACAACGTGATTGACGTTAAATTCGATGGTGACAGCCCAGTATTGCCTGACTGGAACCAAG
GCGGACAAATCTACCCTAGCCAAGATCTCAATGTGGGTGATTCGGTATACACACGTGTCTTCGGCCAAAATGGCGAGAAT
GTATCGTACAGCACTGAATTGGTTATCGACTCCGAAGAACTAGGGGCTGCTAATAACTGGTCACACGCACTCGCGACTAA
GATCAATCAAGAGCAAACTATGCTGCAAGCAGGTCAATTAAACGCTGAAGGTGTGATCTCGCCAATCTACGGCACAAACC
CAATCTACCTAAAGCAAGGCTCTGGCCTGAAGAACGTTGAGATTGACTACAAGATTAACTCTACTGCACCTGAATATGAC
TTAGAGGTTTACGGCTTAGAGTCTGAATACATCATTGGTGATAGCGCGACACAGCTTGATTTAACACTTGAAGCAACGGG
TGATATTAAAACTGAAATGACGGTCTACAACCATCACCACGAGTCGCTTTCTTCGCACTCTGCAGAGCTAAGCGACGGTC
AAGTAGAAGCGGCAACCATGACGCTATCTAAGTCAGAGCCGGGCCACCATATGTTGGTTGTCGTGGTTAAAGACCAGCAA
GGCAAGGTGATTGAGCAAAATACACTCGACTTCCACCTTATTGAGGAACAGACTCCACCACCGTCTGGTGAGTATGATTT
TGTCTTCCCAGAAGGCCTAAATACGTATACTGCTGGCACTAAAGTTCTAGCGTCAGATGGTGCTGTCTACCAATGTAAGG
AGTTCCCTTTCTCTGGTTACTGCACTCAGTGGTCTCCGAGTGCAACTCAATTCGAGCCAGGAAAAGGTTCTCACTGGAGT
GAAGCTTGGAATAAAGTGAATTAA

Upstream 100 bases:

>100_bases
ATTCTGCCAATCATGTGTTTTTTTGCAGTGCTAGAATGCAACGGCCTCATAGAAATGAGGATAACATCACATTTCAAATC
AAAACGAGACATTGTAAACG

Downstream 100 bases:

>100_bases
TTTAATAAAACAACCGATAAAACTTAGGTTCAACGAGTTGGTAAAGTGGTATTGCTAACTCGTTGAGCCTTTAGAGGGGG
GCCTATAACGGTGCTTGTGT

Product: N-acetylglucosamine-binding protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKKLPNKSLIALALLSVSGASFGHGYVSAYENGVAEGRATLCRVPANDTNEKNTNCGGIEYEPQSVEGPDGFPETGPRDG
KIASAENSLAAALDEQTADRWVKRPIQSGNQHFEWNFTANHITKDWKYYITKADWNPNQPLARDSFDLNPFCVVDGGMVK
PPMRVSHLCNVPEREGYQVILAVWDVGDTAASFYNVIDVKFDGDSPVLPDWNQGGQIYPSQDLNVGDSVYTRVFGQNGEN
VSYSTELVIDSEELGAANNWSHALATKINQEQTMLQAGQLNAEGVISPIYGTNPIYLKQGSGLKNVEIDYKINSTAPEYD
LEVYGLESEYIIGDSATQLDLTLEATGDIKTEMTVYNHHHESLSSHSAELSDGQVEAATMTLSKSEPGHHMLVVVVKDQQ
GKVIEQNTLDFHLIEEQTPPPSGEYDFVFPEGLNTYTAGTKVLASDGAVYQCKEFPFSGYCTQWSPSATQFEPGKGSHWS
EAWNKVN

Sequences:

>Translated_487_residues
MKKLPNKSLIALALLSVSGASFGHGYVSAYENGVAEGRATLCRVPANDTNEKNTNCGGIEYEPQSVEGPDGFPETGPRDG
KIASAENSLAAALDEQTADRWVKRPIQSGNQHFEWNFTANHITKDWKYYITKADWNPNQPLARDSFDLNPFCVVDGGMVK
PPMRVSHLCNVPEREGYQVILAVWDVGDTAASFYNVIDVKFDGDSPVLPDWNQGGQIYPSQDLNVGDSVYTRVFGQNGEN
VSYSTELVIDSEELGAANNWSHALATKINQEQTMLQAGQLNAEGVISPIYGTNPIYLKQGSGLKNVEIDYKINSTAPEYD
LEVYGLESEYIIGDSATQLDLTLEATGDIKTEMTVYNHHHESLSSHSAELSDGQVEAATMTLSKSEPGHHMLVVVVKDQQ
GKVIEQNTLDFHLIEEQTPPPSGEYDFVFPEGLNTYTAGTKVLASDGAVYQCKEFPFSGYCTQWSPSATQFEPGKGSHWS
EAWNKVN
>Mature_487_residues
MKKLPNKSLIALALLSVSGASFGHGYVSAYENGVAEGRATLCRVPANDTNEKNTNCGGIEYEPQSVEGPDGFPETGPRDG
KIASAENSLAAALDEQTADRWVKRPIQSGNQHFEWNFTANHITKDWKYYITKADWNPNQPLARDSFDLNPFCVVDGGMVK
PPMRVSHLCNVPEREGYQVILAVWDVGDTAASFYNVIDVKFDGDSPVLPDWNQGGQIYPSQDLNVGDSVYTRVFGQNGEN
VSYSTELVIDSEELGAANNWSHALATKINQEQTMLQAGQLNAEGVISPIYGTNPIYLKQGSGLKNVEIDYKINSTAPEYD
LEVYGLESEYIIGDSATQLDLTLEATGDIKTEMTVYNHHHESLSSHSAELSDGQVEAATMTLSKSEPGHHMLVVVVKDQQ
GKVIEQNTLDFHLIEEQTPPPSGEYDFVFPEGLNTYTAGTKVLASDGAVYQCKEFPFSGYCTQWSPSATQFEPGKGSHWS
EAWNKVN

Specific function: Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin

COG id: COG3397

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 chitin-binding type-4 domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GBPA_VIBHB (A7N3J0)

Other databases:

- EMBL:   CP000790
- RefSeq:   YP_001446875.1
- ProteinModelPortal:   A7N3J0
- SMR:   A7N3J0
- STRING:   A7N3J0
- GeneID:   5557894
- GenomeReviews:   CP000790_GR
- KEGG:   vha:VIBHAR_04739
- NMPDR:   fig|338187.4.peg.2728
- eggNOG:   COG3397
- HOGENOM:   HBG298042
- OMA:   RNWRYYL
- ProtClustDB:   PRK13211
- HAMAP:   MF_01905
- InterPro:   IPR004302
- InterPro:   IPR020879
- InterPro:   IPR014756

Pfam domain/function: PF03067 Chitin_bind_3; SSF81296 Ig_E-set

EC number: NA

Molecular weight: Translated: 53469; Mature: 53469

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLPNKSLIALALLSVSGASFGHGYVSAYENGVAEGRATLCRVPANDTNEKNTNCGGIE
CCCCCCCCEEEEEEEHHCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEE
YEPQSVEGPDGFPETGPRDGKIASAENSLAAALDEQTADRWVKRPIQSGNQHFEWNFTAN
ECCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH
HITKDWKYYITKADWNPNQPLARDSFDLNPFCVVDGGMVKPPMRVSHLCNVPEREGYQVI
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCEEE
LAVWDVGDTAASFYNVIDVKFDGDSPVLPDWNQGGQIYPSQDLNVGDSVYTRVFGQNGEN
EEEEECCCHHHCEEEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCHHHHHHEECCCCCC
VSYSTELVIDSEELGAANNWSHALATKINQEQTMLQAGQLNAEGVISPIYGTNPIYLKQG
CEEEEEEEEEHHHCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCEEEEECC
SGLKNVEIDYKINSTAPEYDLEVYGLESEYIIGDSATQLDLTLEATGDIKTEMTVYNHHH
CCCCEEEEEEEECCCCCCCEEEEEECCCCEEECCCCEEEEEEEEECCCCEEEEEEEECCH
ESLSSHSAELSDGQVEAATMTLSKSEPGHHMLVVVVKDQQGKVIEQNTLDFHLIEEQTPP
HHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCCC
PSGEYDFVFPEGLNTYTAGTKVLASDGAVYQCKEFPFSGYCTQWSPSATQFEPGKGSHWS
CCCCEEEECCCCCCEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH
EAWNKVN
HHHHCCC
>Mature Secondary Structure
MKKLPNKSLIALALLSVSGASFGHGYVSAYENGVAEGRATLCRVPANDTNEKNTNCGGIE
CCCCCCCCEEEEEEEHHCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEE
YEPQSVEGPDGFPETGPRDGKIASAENSLAAALDEQTADRWVKRPIQSGNQHFEWNFTAN
ECCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH
HITKDWKYYITKADWNPNQPLARDSFDLNPFCVVDGGMVKPPMRVSHLCNVPEREGYQVI
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCEEE
LAVWDVGDTAASFYNVIDVKFDGDSPVLPDWNQGGQIYPSQDLNVGDSVYTRVFGQNGEN
EEEEECCCHHHCEEEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCHHHHHHEECCCCCC
VSYSTELVIDSEELGAANNWSHALATKINQEQTMLQAGQLNAEGVISPIYGTNPIYLKQG
CEEEEEEEEEHHHCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCEEEEECC
SGLKNVEIDYKINSTAPEYDLEVYGLESEYIIGDSATQLDLTLEATGDIKTEMTVYNHHH
CCCCEEEEEEEECCCCCCCEEEEEECCCCEEECCCCEEEEEEEEECCCCEEEEEEEECCH
ESLSSHSAELSDGQVEAATMTLSKSEPGHHMLVVVVKDQQGKVIEQNTLDFHLIEEQTPP
HHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCCC
PSGEYDFVFPEGLNTYTAGTKVLASDGAVYQCKEFPFSGYCTQWSPSATQFEPGKGSHWS
CCCCEEEECCCCCCEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH
EAWNKVN
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA