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The map label for this gene is ychF [C]

Identifier: 156938152

GI number: 156938152

Start: 1219681

End: 1220886

Strand: Direct

Name: ychF [C]

Synonym: Igni_1365

Alternate gene names: 156938152

Gene position: 1219681-1220886 (Clockwise)

Preceding gene: 156938149

Following gene: 156938153

Centisome position: 94.0

GC content: 55.64

Gene sequence:

>1206_bases
TTGATGCCGCTTTTGGGAGTGGTAGGTAAAACCAACGTCGGGAAGTCGACCTTCTTCAGCGCGGCCACGCTGGTCGAGGT
AGAGACAGAAAATAGGCCGTTTGTAACCATAGACCCGAACGTGGGCGTGACGCACGTTAGGAAGAGGTGTGCTCACGTAG
AACTCGGGTTGCCGAAGTGCGACCCGGTCGACGGCTTCTGCTTGAAGGGGTGGAGGTTCATACCGGTGAAGCTGGTCGAC
GTGGCCGGCCTGGTGCCGGGGGCAGCGGAGGGGAGGGGCTTGGGGACCAAGTTCCTAGACGAGGTCAGGAAGGCCGACGC
CTTATTGATCGTGGTGGACGCGTCGGGCAGCACGGACGCAGAAGGCAACCCCGTGCCCCCGGGTACCCACAACCCGGCAG
AGGACGTGCAAATTCTCTTAAACGAGTTCTCGGGTTGGGTGTTCTCTCAAATGAAGAAGGACTGGAAGAGCTTCGTGACG
AAGGTATCAACTATGGGCATCAGAGCGGCAGAAGCAATGAAGGAGAGGCTGAGCGGGTTTAGCGTTAAGGAGAGAGAAAT
CATTAAGGCAATAAACGAGCTCTCTCTCGATGAGAACTTGGCTAAATGGAGCGAAGAGGACTTAAAGAATTTCGTGAGGA
AGGTGATAGAGCTCAGGCCGAAGGTTATAGTCGCTAACAAGTCAGACTCCGACTTCGCGGAGAGAGGCATTGAAATGTTG
AGGGAGGCGTACCCGAGGACCCCAGTGATCCCTACCTCGGCCGCGGCGGAGTTGATACTCAGAAAGGCCGCCAAGGCCGG
CGCGATAGAGTACGTTCCGGGCGACTCGAGCTTTCAAATAATAGATGAAAAGAAGCTGACCGAGAAGCAGAAGAAAGTGC
TAAAGATGATAGAAAAGAAGGTGCTTGAGAGGTGGGGCAACACCGGAGTAGTACAATCCCTCAACGAAGCGGTCTTCGGA
CAGCTCGAGATGGTCGTGGTCTACCCCGTTCACGACGCTAACAAGTTCACCGACAGCGAGGGCAGAGTGTTGCCAGAAGC
GAGGCTAGTCCCTAAGGGGACGAAGGTGAAGGAGTTCGCAGCACAGATACACAGCGACTTGGCCAAGGGCTTCCTCTACG
CGATAGACGCTAGGACCGGGAGGAGGCTGGGGGCCGACGCTGAAGTCGAGGATGGAATGGTAATAAAGGTAGTTTCGGCT
AAGTAA

Upstream 100 bases:

>100_bases
TAAAAGTTTATTCAGCCAAGGGTGGGTTCCTCACCGTTCGGACCCTAAGGTCTTCATCATAAATTGTCCTCCCGGATTCT
GCGAGAGGGCATAAGAAATC

Downstream 100 bases:

>100_bases
TTTACCGACCGGTAAAAGAAAGGGTATATAGGTTATTTACCAGCCGAGAATGTGGGGCAGAGCCTCAAGAGTGTGGTGAG
AGCATGAGCGTCACCAAACC

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MMPLLGVVGKTNVGKSTFFSAATLVEVETENRPFVTIDPNVGVTHVRKRCAHVELGLPKCDPVDGFCLKGWRFIPVKLVD
VAGLVPGAAEGRGLGTKFLDEVRKADALLIVVDASGSTDAEGNPVPPGTHNPAEDVQILLNEFSGWVFSQMKKDWKSFVT
KVSTMGIRAAEAMKERLSGFSVKEREIIKAINELSLDENLAKWSEEDLKNFVRKVIELRPKVIVANKSDSDFAERGIEML
REAYPRTPVIPTSAAAELILRKAAKAGAIEYVPGDSSFQIIDEKKLTEKQKKVLKMIEKKVLERWGNTGVVQSLNEAVFG
QLEMVVVYPVHDANKFTDSEGRVLPEARLVPKGTKVKEFAAQIHSDLAKGFLYAIDARTGRRLGADAEVEDGMVIKVVSA
K

Sequences:

>Translated_401_residues
MMPLLGVVGKTNVGKSTFFSAATLVEVETENRPFVTIDPNVGVTHVRKRCAHVELGLPKCDPVDGFCLKGWRFIPVKLVD
VAGLVPGAAEGRGLGTKFLDEVRKADALLIVVDASGSTDAEGNPVPPGTHNPAEDVQILLNEFSGWVFSQMKKDWKSFVT
KVSTMGIRAAEAMKERLSGFSVKEREIIKAINELSLDENLAKWSEEDLKNFVRKVIELRPKVIVANKSDSDFAERGIEML
REAYPRTPVIPTSAAAELILRKAAKAGAIEYVPGDSSFQIIDEKKLTEKQKKVLKMIEKKVLERWGNTGVVQSLNEAVFG
QLEMVVVYPVHDANKFTDSEGRVLPEARLVPKGTKVKEFAAQIHSDLAKGFLYAIDARTGRRLGADAEVEDGMVIKVVSA
K
>Mature_401_residues
MMPLLGVVGKTNVGKSTFFSAATLVEVETENRPFVTIDPNVGVTHVRKRCAHVELGLPKCDPVDGFCLKGWRFIPVKLVD
VAGLVPGAAEGRGLGTKFLDEVRKADALLIVVDASGSTDAEGNPVPPGTHNPAEDVQILLNEFSGWVFSQMKKDWKSFVT
KVSTMGIRAAEAMKERLSGFSVKEREIIKAINELSLDENLAKWSEEDLKNFVRKVIELRPKVIVANKSDSDFAERGIEML
REAYPRTPVIPTSAAAELILRKAAKAGAIEYVPGDSSFQIIDEKKLTEKQKKVLKMIEKKVLERWGNTGVVQSLNEAVFG
QLEMVVVYPVHDANKFTDSEGRVLPEARLVPKGTKVKEFAAQIHSDLAKGFLYAIDARTGRRLGADAEVEDGMVIKVVSA
K

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=390, Percent_Identity=25.6410256410256, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1787454, Length=257, Percent_Identity=28.4046692607004, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17509631, Length=378, Percent_Identity=26.4550264550265, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6321649, Length=398, Percent_Identity=36.6834170854271, Blast_Score=212, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6321773, Length=407, Percent_Identity=26.044226044226, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6319499, Length=141, Percent_Identity=36.8794326241135, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 43997; Mature: 43997

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPLLGVVGKTNVGKSTFFSAATLVEVETENRPFVTIDPNVGVTHVRKRCAHVELGLPKC
CCCCCCCCCCCCCCCHHHHCEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCCC
DPVDGFCLKGWRFIPVKLVDVAGLVPGAAEGRGLGTKFLDEVRKADALLIVVDASGSTDA
CCCCCHHHCCEEEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCC
EGNPVPPGTHNPAEDVQILLNEFSGWVFSQMKKDWKSFVTKVSTMGIRAAEAMKERLSGF
CCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
SVKEREIIKAINELSLDENLAKWSEEDLKNFVRKVIELRPKVIVANKSDSDFAERGIEML
CCHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
REAYPRTPVIPTSAAAELILRKAAKAGAIEYVPGDSSFQIIDEKKLTEKQKKVLKMIEKK
HHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHHHH
VLERWGNTGVVQSLNEAVFGQLEMVVVYPVHDANKFTDSEGRVLPEARLVPKGTKVKEFA
HHHHHCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AQIHSDLAKGFLYAIDARTGRRLGADAEVEDGMVIKVVSAK
HHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MMPLLGVVGKTNVGKSTFFSAATLVEVETENRPFVTIDPNVGVTHVRKRCAHVELGLPKC
CCCCCCCCCCCCCCCHHHHCEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCCC
DPVDGFCLKGWRFIPVKLVDVAGLVPGAAEGRGLGTKFLDEVRKADALLIVVDASGSTDA
CCCCCHHHCCEEEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCC
EGNPVPPGTHNPAEDVQILLNEFSGWVFSQMKKDWKSFVTKVSTMGIRAAEAMKERLSGF
CCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
SVKEREIIKAINELSLDENLAKWSEEDLKNFVRKVIELRPKVIVANKSDSDFAERGIEML
CCHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
REAYPRTPVIPTSAAAELILRKAAKAGAIEYVPGDSSFQIIDEKKLTEKQKKVLKMIEKK
HHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHHHH
VLERWGNTGVVQSLNEAVFGQLEMVVVYPVHDANKFTDSEGRVLPEARLVPKGTKVKEFA
HHHHHCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AQIHSDLAKGFLYAIDARTGRRLGADAEVEDGMVIKVVSAK
HHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]