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The map label for this gene is dppC [H]

Identifier: 156938124

GI number: 156938124

Start: 1189689

End: 1191011

Strand: Direct

Name: dppC [H]

Synonym: Igni_1337

Alternate gene names: 156938124

Gene position: 1189689-1191011 (Clockwise)

Preceding gene: 156938123

Following gene: 156938125

Centisome position: 91.69

GC content: 55.4

Gene sequence:

>1323_bases
TTGAACGAGTTCTTGAAGGAGCTGTTGTCCCAGAGCTCCGGCCTCTTCGGTACGCTAACCTTTGTCGTGTTGTTGGCGCT
GGCCCTCTACTCGTTAACGGCCTTCAGCGGCTACGAGAGGCTCTGGAGGAACACGACGTTTTGGTCCGTTTACCCCTCTG
CGGTACCGCCGAGCTGGTTCGGCCAGATGTTCTACCCAGACAAGGTGGTCCCAACCTTCGAAACCGCGCCAACTCACGAA
ACGCTTAAGGTAATGTACGGCGGGAGGGTCTCTAACGTTACCGAGGAATACGAGCTGAGTTACCGCTACGGAGGCGTTCC
CAATGACATAAAGCTCATACTCAAGGTAAGTTACGAGACCCCTCCGGCAGTAGTAGTTAAGGTGGTAAGGCCGGACGGAG
AGGAGGTGAAGCTCCTACAAGCGAGCGCCCGCGACCTACCGTCCACCATTTCGTTCAACAACTATGACGAGATAAAGAAC
AACGTCTACCGTTGGGCCTCTAGGTCGGACGTGCCGGTCACCCAGCTCTTGTTCACGGATAGAGAAGGGAAGGTCCTAAA
GGGTAACTACAAGATCATTGTCAACGTGATCGGTTTGGGGAGAGTCAACGTCACGAGCAAGCTGATACTGGACGGCAATG
TTTACGGGCTTATGGGGACCGACGTCTTCGGGCGCGACGTTTTTACCTTCACTATGATAGGCCTTCCGTACGGCTTGTTA
ATAGGAGTGCTGACGAGCTTGATCGCGGCCCTCTGGGGGACCGTTTACGGTTTGGTGAGCGCTTACGTCGGCGGGAAGGT
GGACAAGGTCATGCAAAGGCTCTTAGAGACTTGGTATTCAATACCGCCCTTGCCGCTCTTGATACTTCTGGCCATAATAT
ACAAACCCAGCTTGATCGTAATAATATTATTGATCGCCGTATTCTCGTGGATGGGCGTTGCTAAGGTAGTTAGATCAATG
GTCCTCAGCATTAAGAACGAAGGCTACGTCCTGGCCGCCAAGGCCGCCGGCGCGGGGCCCTTCTGGATAATGTTCAAACA
CGTCTTGCCCCAAGTAATGCCCTACACCGCCGCCCAAGTGGCCTTGGGCGTGCCAGGGGCGATCCTCACGGAGGTCTCGC
TCGACTTCTTGGGCTTGGGCGACCCCAACGTGCCCACGTGGGGGTGGATGCTCCACGACGCCCAAGTTTACGGGGCCAGC
GTGAGCGGCTACTGGTGGTGGATACTACCGCCCGGCTTGATGGTGGCTCTGGTGGCGCTGAGCTTCGCAATGATAGGTCA
CGCGATGGATGTGATACTAAATCCGAAGCTGAAGGAGGTGTAA

Upstream 100 bases:

>100_bases
CGGCTTGACGTACATATTTACGTTAGTTTTCGTAATAGCTATGGTAATATTAGATGTGATGTACATAGTCTTAGATCCTA
GGGTGAGGTGGTGAAGGGCT

Downstream 100 bases:

>100_bases
ACCGTGCTAAAGGTGGAGGACCTCAAGGTGTATTACTACACGCACAGGGGAGTGGTCAAAGCCGTGGACGGCGTCAGTTT
CGAGTTGAAGAAGGGGGAGA

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MNEFLKELLSQSSGLFGTLTFVVLLALALYSLTAFSGYERLWRNTTFWSVYPSAVPPSWFGQMFYPDKVVPTFETAPTHE
TLKVMYGGRVSNVTEEYELSYRYGGVPNDIKLILKVSYETPPAVVVKVVRPDGEEVKLLQASARDLPSTISFNNYDEIKN
NVYRWASRSDVPVTQLLFTDREGKVLKGNYKIIVNVIGLGRVNVTSKLILDGNVYGLMGTDVFGRDVFTFTMIGLPYGLL
IGVLTSLIAALWGTVYGLVSAYVGGKVDKVMQRLLETWYSIPPLPLLILLAIIYKPSLIVIILLIAVFSWMGVAKVVRSM
VLSIKNEGYVLAAKAAGAGPFWIMFKHVLPQVMPYTAAQVALGVPGAILTEVSLDFLGLGDPNVPTWGWMLHDAQVYGAS
VSGYWWWILPPGLMVALVALSFAMIGHAMDVILNPKLKEV

Sequences:

>Translated_440_residues
MNEFLKELLSQSSGLFGTLTFVVLLALALYSLTAFSGYERLWRNTTFWSVYPSAVPPSWFGQMFYPDKVVPTFETAPTHE
TLKVMYGGRVSNVTEEYELSYRYGGVPNDIKLILKVSYETPPAVVVKVVRPDGEEVKLLQASARDLPSTISFNNYDEIKN
NVYRWASRSDVPVTQLLFTDREGKVLKGNYKIIVNVIGLGRVNVTSKLILDGNVYGLMGTDVFGRDVFTFTMIGLPYGLL
IGVLTSLIAALWGTVYGLVSAYVGGKVDKVMQRLLETWYSIPPLPLLILLAIIYKPSLIVIILLIAVFSWMGVAKVVRSM
VLSIKNEGYVLAAKAAGAGPFWIMFKHVLPQVMPYTAAQVALGVPGAILTEVSLDFLGLGDPNVPTWGWMLHDAQVYGAS
VSGYWWWILPPGLMVALVALSFAMIGHAMDVILNPKLKEV
>Mature_440_residues
MNEFLKELLSQSSGLFGTLTFVVLLALALYSLTAFSGYERLWRNTTFWSVYPSAVPPSWFGQMFYPDKVVPTFETAPTHE
TLKVMYGGRVSNVTEEYELSYRYGGVPNDIKLILKVSYETPPAVVVKVVRPDGEEVKLLQASARDLPSTISFNNYDEIKN
NVYRWASRSDVPVTQLLFTDREGKVLKGNYKIIVNVIGLGRVNVTSKLILDGNVYGLMGTDVFGRDVFTFTMIGLPYGLL
IGVLTSLIAALWGTVYGLVSAYVGGKVDKVMQRLLETWYSIPPLPLLILLAIIYKPSLIVIILLIAVFSWMGVAKVVRSM
VLSIKNEGYVLAAKAAGAGPFWIMFKHVLPQVMPYTAAQVALGVPGAILTEVSLDFLGLGDPNVPTWGWMLHDAQVYGAS
VSGYWWWILPPGLMVALVALSFAMIGHAMDVILNPKLKEV

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=219, Percent_Identity=31.9634703196347, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787498, Length=219, Percent_Identity=35.6164383561644, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789964, Length=229, Percent_Identity=34.4978165938865, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787054, Length=224, Percent_Identity=29.0178571428571, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1788505, Length=165, Percent_Identity=35.1515151515151, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789889, Length=240, Percent_Identity=28.3333333333333, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787549, Length=189, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 48610; Mature: 48610

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFLKELLSQSSGLFGTLTFVVLLALALYSLTAFSGYERLWRNTTFWSVYPSAVPPSWF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
GQMFYPDKVVPTFETAPTHETLKVMYGGRVSNVTEEYELSYRYGGVPNDIKLILKVSYET
CCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCCHHHEEEEECCCCCCCEEEEEEEECCC
PPAVVVKVVRPDGEEVKLLQASARDLPSTISFNNYDEIKNNVYRWASRSDVPVTQLLFTD
CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHEEEC
REGKVLKGNYKIIVNVIGLGRVNVTSKLILDGNVYGLMGTDVFGRDVFTFTMIGLPYGLL
CCCCEEECCEEEEEEEEECCEECCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHH
IGVLTSLIAALWGTVYGLVSAYVGGKVDKVMQRLLETWYSIPPLPLLILLAIIYKPSLIV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
IILLIAVFSWMGVAKVVRSMVLSIKNEGYVLAAKAAGAGPFWIMFKHVLPQVMPYTAAQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHH
ALGVPGAILTEVSLDFLGLGDPNVPTWGWMLHDAQVYGASVSGYWWWILPPGLMVALVAL
HHCCCCHHHHHHHHHEEECCCCCCCCCEEEEEEEEEECCEECCEEEEECCHHHHHHHHHH
SFAMIGHAMDVILNPKLKEV
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNEFLKELLSQSSGLFGTLTFVVLLALALYSLTAFSGYERLWRNTTFWSVYPSAVPPSWF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
GQMFYPDKVVPTFETAPTHETLKVMYGGRVSNVTEEYELSYRYGGVPNDIKLILKVSYET
CCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCCHHHEEEEECCCCCCCEEEEEEEECCC
PPAVVVKVVRPDGEEVKLLQASARDLPSTISFNNYDEIKNNVYRWASRSDVPVTQLLFTD
CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHEEEC
REGKVLKGNYKIIVNVIGLGRVNVTSKLILDGNVYGLMGTDVFGRDVFTFTMIGLPYGLL
CCCCEEECCEEEEEEEEECCEECCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHH
IGVLTSLIAALWGTVYGLVSAYVGGKVDKVMQRLLETWYSIPPLPLLILLAIIYKPSLIV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
IILLIAVFSWMGVAKVVRSMVLSIKNEGYVLAAKAAGAGPFWIMFKHVLPQVMPYTAAQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHH
ALGVPGAILTEVSLDFLGLGDPNVPTWGWMLHDAQVYGASVSGYWWWILPPGLMVALVAL
HHCCCCHHHHHHHHHEEECCCCCCCCCEEEEEEEEEECCEECCEEEEECCHHHHHHHHHH
SFAMIGHAMDVILNPKLKEV
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]