Click here to switch to the map view.

The map label for this gene is ribC [H]

Identifier: 156938121

GI number: 156938121

Start: 1186972

End: 1187418

Strand: Direct

Name: ribC [H]

Synonym: Igni_1334

Alternate gene names: 156938121

Gene position: 1186972-1187418 (Clockwise)

Preceding gene: 156938119

Following gene: 156938123

Centisome position: 91.48

GC content: 56.6

Gene sequence:

>447_bases
GTGGTCGACACCACGTTCTCCAGGGTAGACATGGCGAAGTACGCAATTGAGGTGTTAAGGAAGAAGGTTCCGGCCTTGAA
GGTGAAGAGGTACACCGTCCCCGGGATAAAGGACGTGGCCGTAGCCGCGAAGAGGCTTTTGGACGAGGGTTGCGACGGAG
TAATAACGTTGGGGTGGGTGGGCCCCACCATGACGGACAAGTTCTCTTACCTAGCCTACAGCATCGCCCTCCAAATGCTC
CAAATAAACTACGGAAAACACATAATAGATGTAACTGTGCACGAGGACGAGACCGACGACCCGCGGAAGCTGAAGGAAAT
AGCCGTACAGAGGGCAAAGGAACACGCGGAGAACTTAGCCCTCTTGATCCTTAAGGGGCCCCAAGCCCTCACCGGCCTCG
CGGGAACCGGACAGAGGCAAGGCTGGCCCGACGTCGGACCTTTGTGA

Upstream 100 bases:

>100_bases
TCTCTTAAGACATTTCACCGTGTTTCCCACCCGAGGTGGGGTGGGGGTAAAATAAGGGGGCCTTGTAATGGTTCCGGGGA
AGTAGTTGGTTTGTATAGGC

Downstream 100 bases:

>100_bases
GGCCAAGAAAGCTATGACGACCGCCTCCAAGGCGGCGGCCACGGCCGTTTCCGTGGAGAGGACCGCCCCCGGGGCCACGT
CGACCACGAAGTCCGCAAAC

Product: riboflavin synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MVDTTFSRVDMAKYAIEVLRKKVPALKVKRYTVPGIKDVAVAAKRLLDEGCDGVITLGWVGPTMTDKFSYLAYSIALQML
QINYGKHIIDVTVHEDETDDPRKLKEIAVQRAKEHAENLALLILKGPQALTGLAGTGQRQGWPDVGPL

Sequences:

>Translated_148_residues
MVDTTFSRVDMAKYAIEVLRKKVPALKVKRYTVPGIKDVAVAAKRLLDEGCDGVITLGWVGPTMTDKFSYLAYSIALQML
QINYGKHIIDVTVHEDETDDPRKLKEIAVQRAKEHAENLALLILKGPQALTGLAGTGQRQGWPDVGPL
>Mature_148_residues
MVDTTFSRVDMAKYAIEVLRKKVPALKVKRYTVPGIKDVAVAAKRLLDEGCDGVITLGWVGPTMTDKFSYLAYSIALQML
QINYGKHIIDVTVHEDETDDPRKLKEIAVQRAKEHAENLALLILKGPQALTGLAGTGQRQGWPDVGPL

Specific function: Unknown

COG id: COG1731

COG function: function code H; Archaeal riboflavin synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DMRL synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002180
- InterPro:   IPR006399 [H]

Pfam domain/function: PF00885 DMRL_synthase [H]

EC number: =2.5.1.9 [H]

Molecular weight: Translated: 16315; Mature: 16315

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDTTFSRVDMAKYAIEVLRKKVPALKVKRYTVPGIKDVAVAAKRLLDEGCDGVITLGWV
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEC
GPTMTDKFSYLAYSIALQMLQINYGKHIIDVTVHEDETDDPRKLKEIAVQRAKEHAENLA
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEE
LLILKGPQALTGLAGTGQRQGWPDVGPL
EEEEECCHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVDTTFSRVDMAKYAIEVLRKKVPALKVKRYTVPGIKDVAVAAKRLLDEGCDGVITLGWV
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEC
GPTMTDKFSYLAYSIALQMLQINYGKHIIDVTVHEDETDDPRKLKEIAVQRAKEHAENLA
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEE
LLILKGPQALTGLAGTGQRQGWPDVGPL
EEEEECCHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]