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The map label for this gene is ycbY [C]

Identifier: 156937611

GI number: 156937611

Start: 725116

End: 726099

Strand: Direct

Name: ycbY [C]

Synonym: Igni_0818

Alternate gene names: 156937611

Gene position: 725116-726099 (Clockwise)

Preceding gene: 156937610

Following gene: 156937618

Centisome position: 55.88

GC content: 57.93

Gene sequence:

>984_bases
GTGTTCAGCACTAACCCCGGACTGGAGGACGTGGCGGCGGCGGAGCTGAAGTCTTGGGGGCTGGAGGTCCTCGGCACCTC
CAAGGGCCGCGTCGAGGCCCGCTTTAGAAAGTTGGAAGAGCTCGTTTGGAGGTTGGAACGCTCTAAGAGCATACACAAAG
CCTACGTACTCGTATTCGAGGGGAAGCTGGAGGAACTGGAACTTGACGGCATAGAATTGTTCGTCACCCCGTGGACGCCC
TTCGCTGTAAGGGCGGAGAGGGTAGGCGAGGGCCCCAGCTCCCCGGAGCTGGCGGCCGAAGTGGGCGACCGCGTCATAAA
GAGAGTAGAAAAAGTGTACGGGATGAGGCCCGAGGTCAACTTAGACTACCCCAGCGTGGTCGTCCGCGCTGAGTGGTACT
TCGACCGGGTCAGGGTGGGCGTGGAGGTCTCGGGAGAGGAGAGCTTACACAGGAGGTATTACAGAGTGGAGGAACACATG
GCCTCCCTCAAGCCCACCATAGCTTACGCTATGTTGTTCTTGGGGGGTGCTAGGGGCGCGGAGAGGCTGGTGGACCCCAT
GTGCGGTTCCGGAACAGTCGCGATCGAGGGCGCGCTGGACTTCGCGGTTCCGGAGATAATGTGCTTCGACGTGAAACCGA
AATACGTTAAGAAGGCTATTATAAATTCTGAGGTGGCCAGGGTGAGGGAGCTCATAGCGTTCGGCGTCCATGACGCTAGA
AAGCTTCACGAGGTCTTGGATTGGGCCGACTTGATAGTCACTAACCCTCCCTACGGCGTTAGGATGGGGAGTCCGAAAAA
GGTGCTCAAGCTGTATGAAGAATTCTTCCAATCGGTAGCGAGGGTACTTCACGGAAAGCTGGTCATGATTACGCCCCTAA
GGGAGACGCGGGAGTTGGCGGAGAGGAGCGGACTCGAAGTGGCGGAAGAAAGGGAAGTCTACCACGGCGACTTGTGGGTG
AAGCTGTTCGTGTTCAAGGCTTGA

Upstream 100 bases:

>100_bases
CGCGCGCTCGGCTTTACTTGGGAGGAGCTTAGAAACGACTTTAAGAAGAGGGCTATTTTCAACGCTTACGTCCTCCACTT
GGTGAGCGCGAGTGCGGGCG

Downstream 100 bases:

>100_bases
GGGGTCCTCGCCCGCAGGGAAGCTCCTCACCCTTCGGCTAGGCGTTGGGTCGTCATACCCCTTGACCCTAGGTGAGCACC
TCCCTTAACTTCCAGCACCT

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MFSTNPGLEDVAAAELKSWGLEVLGTSKGRVEARFRKLEELVWRLERSKSIHKAYVLVFEGKLEELELDGIELFVTPWTP
FAVRAERVGEGPSSPELAAEVGDRVIKRVEKVYGMRPEVNLDYPSVVVRAEWYFDRVRVGVEVSGEESLHRRYYRVEEHM
ASLKPTIAYAMLFLGGARGAERLVDPMCGSGTVAIEGALDFAVPEIMCFDVKPKYVKKAIINSEVARVRELIAFGVHDAR
KLHEVLDWADLIVTNPPYGVRMGSPKKVLKLYEEFFQSVARVLHGKLVMITPLRETRELAERSGLEVAEEREVYHGDLWV
KLFVFKA

Sequences:

>Translated_327_residues
MFSTNPGLEDVAAAELKSWGLEVLGTSKGRVEARFRKLEELVWRLERSKSIHKAYVLVFEGKLEELELDGIELFVTPWTP
FAVRAERVGEGPSSPELAAEVGDRVIKRVEKVYGMRPEVNLDYPSVVVRAEWYFDRVRVGVEVSGEESLHRRYYRVEEHM
ASLKPTIAYAMLFLGGARGAERLVDPMCGSGTVAIEGALDFAVPEIMCFDVKPKYVKKAIINSEVARVRELIAFGVHDAR
KLHEVLDWADLIVTNPPYGVRMGSPKKVLKLYEEFFQSVARVLHGKLVMITPLRETRELAERSGLEVAEEREVYHGDLWV
KLFVFKA
>Mature_327_residues
MFSTNPGLEDVAAAELKSWGLEVLGTSKGRVEARFRKLEELVWRLERSKSIHKAYVLVFEGKLEELELDGIELFVTPWTP
FAVRAERVGEGPSSPELAAEVGDRVIKRVEKVYGMRPEVNLDYPSVVVRAEWYFDRVRVGVEVSGEESLHRRYYRVEEHM
ASLKPTIAYAMLFLGGARGAERLVDPMCGSGTVAIEGALDFAVPEIMCFDVKPKYVKKAIINSEVARVRELIAFGVHDAR
KLHEVLDWADLIVTNPPYGVRMGSPKKVLKLYEEFFQSVARVLHGKLVMITPLRETRELAERSGLEVAEEREVYHGDLWV
KLFVFKA

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Homo sapiens, GI166197708, Length=229, Percent_Identity=30.5676855895196, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI166197706, Length=229, Percent_Identity=30.5676855895196, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1787181, Length=251, Percent_Identity=24.7011952191235, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 37080; Mature: 37080

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSTNPGLEDVAAAELKSWGLEVLGTSKGRVEARFRKLEELVWRLERSKSIHKAYVLVFE
CCCCCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
GKLEELELDGIELFVTPWTPFAVRAERVGEGPSSPELAAEVGDRVIKRVEKVYGMRPEVN
CCHHHEECCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
LDYPSVVVRAEWYFDRVRVGVEVSGEESLHRRYYRVEEHMASLKPTIAYAMLFLGGARGA
CCCCCEEEEEHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ERLVDPMCGSGTVAIEGALDFAVPEIMCFDVKPKYVKKAIINSEVARVRELIAFGVHDAR
HHHHCCCCCCCCEEEECCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
KLHEVLDWADLIVTNPPYGVRMGSPKKVLKLYEEFFQSVARVLHGKLVMITPLRETRELA
HHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
ERSGLEVAEEREVYHGDLWVKLFVFKA
HHCCCCHHHHHHHHCCCEEEEEEEECC
>Mature Secondary Structure
MFSTNPGLEDVAAAELKSWGLEVLGTSKGRVEARFRKLEELVWRLERSKSIHKAYVLVFE
CCCCCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
GKLEELELDGIELFVTPWTPFAVRAERVGEGPSSPELAAEVGDRVIKRVEKVYGMRPEVN
CCHHHEECCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
LDYPSVVVRAEWYFDRVRVGVEVSGEESLHRRYYRVEEHMASLKPTIAYAMLFLGGARGA
CCCCCEEEEEHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ERLVDPMCGSGTVAIEGALDFAVPEIMCFDVKPKYVKKAIINSEVARVRELIAFGVHDAR
HHHHCCCCCCCCEEEECCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
KLHEVLDWADLIVTNPPYGVRMGSPKKVLKLYEEFFQSVARVLHGKLVMITPLRETRELA
HHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
ERSGLEVAEEREVYHGDLWVKLFVFKA
HHCCCCHHHHHHHHCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]