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The map label for this gene is aubA

Identifier: 156937554

GI number: 156937554

Start: 682656

End: 684065

Strand: Direct

Name: aubA

Synonym: Igni_0761

Alternate gene names: 156937554

Gene position: 682656-684065 (Clockwise)

Preceding gene: 156937553

Following gene: 156937555

Centisome position: 52.61

GC content: 53.4

Gene sequence:

>1410_bases
ATGGAAAAACCTAGGGTCAGGGTAAGAGGTATCTACGCAACGGCTGTAGCTAAGGTTTTATTGGACGAGGGGCTCGAGCT
GAGTGACCTCTCGAAGAAGCTCAAGGAGAGAATAGGACACGAGGGCTCTCCCGAGCCTCCTCACGTAACTGTCAAGCAGT
CGGATGACAACCCTGACCAATTGGTTATCATCGGGTTTCCCGAGGAGACGGATAAGGTTATTCAAACGCTCAGAAAGAGC
ATGCCCTATTCTGTACACCACTTAGCGAGGCCTAACCTCCACAGCGCTTATGTGGTCGAGGTGGACGAGGAGTGTAGGAC
TAAACTAGGCGAAGAGGAAGTGAGGGTTAAGGCGAAGGAGTGTTACGACGGAAAAAAGTTAATAGCTGAGGTCGTGCGTT
CCAGGGTCTTCCCGACCGATAAATTGGTGATGGAAGAGGGCTTCCGGGTGATAGGGCTCTATGCAGAACTAGTGATCGGC
AGGGGGAGCGGAGTAACTTTCTCTAAGCATATTACAGACTTGGAGACCAAGATGTTACTAATGAACTTGGCTGCTGAGGT
CGTCAGGAGGGGGGTAAAAGTCCACTGGAGGAGCTCAGCCAAGAAGGCCGAACCTCAAGTCCTCCTCGAGGAGCTCGAGA
AGCTTTACGACGAGGCCACGAAGATAATGGTAAAGGCGAGGGACGCCGACCACGGGACCGAAGTCTATCCCGGCGAGAGG
CTGGACGTGGTCGAGCTGACCTTAGAAGACAAGGTAATCCTGGACGAAATCCGGTCGAAGGTGGTGCCCACGATGCCTTA
CCATCACAGCCTCAAGTCCGGGGGCGACCGCATGGCCGCTGCCGTCGAGTTGGGCGATAAGATAGCAGCGAGTAGCGAGG
TTAAGGCAGAGAGCGTCATAGACTACATAATTGACTTAGCAAGGGATATGAAGTACCTTAACATAATCCACAAGAAGGTT
GACGGCGCCGAGTACTCGTTGGGCAGGGCAAGGGTTAGGGGGAACGTAGATAACTACTTGGTCTTAGAGAGGAGGAGCAA
GGACTATGGAAAGTACGACGGCTTGGACGTGGTGAAGGAGCCGGGGGACCTCATGATCACGCTGGTAAGCCCGTTCTCGA
GGTACCTAATACACGCGTACTACGACCAGTACGGCAACGAGAAGGGAATTTACGTTAACGTAAACACCGGTGTGGAGGTG
GGGGAAGGCAACGTGAGGTACATAGACTTGGAAGTTGATATAATACACAAGGACGGGGAGTGGAGTGTAATAGACGAAGA
CGGGCTGGACCGCTTACCCGCCCCCTTGCGCGAGCTCGCAGTGGCTGAGGTTGAAAAGCTCCTCTCGCACCCCGACCGGA
TAAAAGAAGTTGTCGCGAATGCACGAGAGCTGCTCTCTGCTCAACTCTAA

Upstream 100 bases:

>100_bases
ACGAGATAGTGCAAGACCCCAACATGCCTATACATACGAGAATAACTATATGGAACGTCGTAACCCTCCTCGAGACAGTG
AAGGACTAAAGGGGTCGATA

Downstream 100 bases:

>100_bases
AGTTGCCTTGGCCTACGGAGAGCCGTTCAAGAAACTCTACTTGCTGCCATCCCTCTTGGGCTGCGACGAAGAGACGGTGT
ATCTGATACCTTCTCACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: AU-binding protein

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MEKPRVRVRGIYATAVAKVLLDEGLELSDLSKKLKERIGHEGSPEPPHVTVKQSDDNPDQLVIIGFPEETDKVIQTLRKS
MPYSVHHLARPNLHSAYVVEVDEECRTKLGEEEVRVKAKECYDGKKLIAEVVRSRVFPTDKLVMEEGFRVIGLYAELVIG
RGSGVTFSKHITDLETKMLLMNLAAEVVRRGVKVHWRSSAKKAEPQVLLEELEKLYDEATKIMVKARDADHGTEVYPGER
LDVVELTLEDKVILDEIRSKVVPTMPYHHSLKSGGDRMAAAVELGDKIAASSEVKAESVIDYIIDLARDMKYLNIIHKKV
DGAEYSLGRARVRGNVDNYLVLERRSKDYGKYDGLDVVKEPGDLMITLVSPFSRYLIHAYYDQYGNEKGIYVNVNTGVEV
GEGNVRYIDLEVDIIHKDGEWSVIDEDGLDRLPAPLRELAVAEVEKLLSHPDRIKEVVANARELLSAQL

Sequences:

>Translated_469_residues
MEKPRVRVRGIYATAVAKVLLDEGLELSDLSKKLKERIGHEGSPEPPHVTVKQSDDNPDQLVIIGFPEETDKVIQTLRKS
MPYSVHHLARPNLHSAYVVEVDEECRTKLGEEEVRVKAKECYDGKKLIAEVVRSRVFPTDKLVMEEGFRVIGLYAELVIG
RGSGVTFSKHITDLETKMLLMNLAAEVVRRGVKVHWRSSAKKAEPQVLLEELEKLYDEATKIMVKARDADHGTEVYPGER
LDVVELTLEDKVILDEIRSKVVPTMPYHHSLKSGGDRMAAAVELGDKIAASSEVKAESVIDYIIDLARDMKYLNIIHKKV
DGAEYSLGRARVRGNVDNYLVLERRSKDYGKYDGLDVVKEPGDLMITLVSPFSRYLIHAYYDQYGNEKGIYVNVNTGVEV
GEGNVRYIDLEVDIIHKDGEWSVIDEDGLDRLPAPLRELAVAEVEKLLSHPDRIKEVVANARELLSAQL
>Mature_469_residues
MEKPRVRVRGIYATAVAKVLLDEGLELSDLSKKLKERIGHEGSPEPPHVTVKQSDDNPDQLVIIGFPEETDKVIQTLRKS
MPYSVHHLARPNLHSAYVVEVDEECRTKLGEEEVRVKAKECYDGKKLIAEVVRSRVFPTDKLVMEEGFRVIGLYAELVIG
RGSGVTFSKHITDLETKMLLMNLAAEVVRRGVKVHWRSSAKKAEPQVLLEELEKLYDEATKIMVKARDADHGTEVYPGER
LDVVELTLEDKVILDEIRSKVVPTMPYHHSLKSGGDRMAAAVELGDKIAASSEVKAESVIDYIIDLARDMKYLNIIHKKV
DGAEYSLGRARVRGNVDNYLVLERRSKDYGKYDGLDVVKEPGDLMITLVSPFSRYLIHAYYDQYGNEKGIYVNVNTGVEV
GEGNVRYIDLEVDIIHKDGEWSVIDEDGLDRLPAPLRELAVAEVEKLLSHPDRIKEVVANARELLSAQL

Specific function: Binds to RNA in loop regions with AU-rich sequences

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AUBA_IGNH4 (A8AAJ1)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435350.1
- ProteinModelPortal:   A8AAJ1
- SMR:   A8AAJ1
- STRING:   A8AAJ1
- GeneID:   5562825
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0761
- eggNOG:   arNOG04009
- OMA:   ERIGHEG
- BioCyc:   IHOS453591:IGNI_0761-MONOMER
- HAMAP:   MF_01910
- InterPro:   IPR007295

Pfam domain/function: PF04167 DUF402

EC number: NA

Molecular weight: Translated: 52803; Mature: 52803

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKPRVRVRGIYATAVAKVLLDEGLELSDLSKKLKERIGHEGSPEPPHVTVKQSDDNPDQ
CCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
LVIIGFPEETDKVIQTLRKSMPYSVHHLARPNLHSAYVVEVDEECRTKLGEEEVRVKAKE
EEEEECCCHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEECHHHHHCCCHHHHHHHHHH
CYDGKKLIAEVVRSRVFPTDKLVMEEGFRVIGLYAELVIGRGSGVTFSKHITDLETKMLL
HCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEHHHEECCCCCCHHHHHHHHHHHHHH
MNLAAEVVRRGVKVHWRSSAKKAEPQVLLEELEKLYDEATKIMVKARDADHGTEVYPGER
HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
LDVVELTLEDKVILDEIRSKVVPTMPYHHSLKSGGDRMAAAVELGDKIAASSEVKAESVI
CEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH
DYIIDLARDMKYLNIIHKKVDGAEYSLGRARVRGNVDNYLVLERRSKDYGKYDGLDVVKE
HHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHCCCCCCEEEEEECCCCCCCCCCCHHCCC
PGDLMITLVSPFSRYLIHAYYDQYGNEKGIYVNVNTGVEVGEGNVRYIDLEVDIIHKDGE
CCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEEEEEEEEECCC
WSVIDEDGLDRLPAPLRELAVAEVEKLLSHPDRIKEVVANARELLSAQL
EEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKPRVRVRGIYATAVAKVLLDEGLELSDLSKKLKERIGHEGSPEPPHVTVKQSDDNPDQ
CCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
LVIIGFPEETDKVIQTLRKSMPYSVHHLARPNLHSAYVVEVDEECRTKLGEEEVRVKAKE
EEEEECCCHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEECHHHHHCCCHHHHHHHHHH
CYDGKKLIAEVVRSRVFPTDKLVMEEGFRVIGLYAELVIGRGSGVTFSKHITDLETKMLL
HCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEHHHEECCCCCCHHHHHHHHHHHHHH
MNLAAEVVRRGVKVHWRSSAKKAEPQVLLEELEKLYDEATKIMVKARDADHGTEVYPGER
HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
LDVVELTLEDKVILDEIRSKVVPTMPYHHSLKSGGDRMAAAVELGDKIAASSEVKAESVI
CEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH
DYIIDLARDMKYLNIIHKKVDGAEYSLGRARVRGNVDNYLVLERRSKDYGKYDGLDVVKE
HHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHCCCCCCEEEEEECCCCCCCCCCCHHCCC
PGDLMITLVSPFSRYLIHAYYDQYGNEKGIYVNVNTGVEVGEGNVRYIDLEVDIIHKDGE
CCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEEEEEEEEECCC
WSVIDEDGLDRLPAPLRELAVAEVEKLLSHPDRIKEVVANARELLSAQL
EEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA