Click here to switch to the map view.

The map label for this gene is 156937103

Identifier: 156937103

GI number: 156937103

Start: 263421

End: 264614

Strand: Direct

Name: 156937103

Synonym: Igni_0309

Alternate gene names: NA

Gene position: 263421-264614 (Clockwise)

Preceding gene: 156937102

Following gene: 156937105

Centisome position: 20.3

GC content: 62.73

Gene sequence:

>1194_bases
ATGATAGTGGCTCTGGACAGCTTCGACGAGCCCCGCTCCGGGTGCACGACCCTCACCGCCAGCTTACTAGCCCTCCACTT
GGCCTCCAAGGGCTTCCGGATGCTGGACTACCCCCGCTTGGTCCGCTTGAACCCTGCGGTCCCTTGGAAGACCCGGGGGA
ACGCGGCGGTAGCCCTCGAGTTCGAGGGGAGCGCAGAGGAGCTCTTCGAGGAGGCGAAGGCCTTCTTGGAGCGCGCCCCG
GGGAGGGGGGCCCTCGCGGTGGGGGAGGAGTTCCCCGAGGTCTACCCCGACGCGGTGGAGAAGGTCTTGGACCCTGACGA
GGTGGCCAAGAAGTTCGAGGGCTTGTGGTGGGGGAGGAAGGAGGCCTTGGTTGGCGCGCTGGCGGCGGGGGCGGCTGAGG
GGCTGAACAACTTCGAGCTGCTGGCGTACAGGCTCCCCCAGAACTTGGGGAGGCCTAGGAGGTGCTCCTTCCACCCGGCC
TACGAGGCCCTCCTGGAGCTGGCCTACCCCTCGATCCACGAGAGCTCGCCGGAGGTGGTATGCCCCAAGGGCCCGGACCC
GGTGCTCTTGGGCATAAGGGGCTCCCACCCTCCCTTGATGTGGGCCGCCCTCCAGCTCTTCGACGGGGAGCCCTTCTGGC
TCGCGACCATGTTTAGGACGAACCAACACTCCTACGAGCCCTCCCGGAGGGCCGAGGAGTACCCCTACGAGTTCGTGCAG
AAGGAGTTCGAAGGGAGTTACGAGGTGAGGGGGGAGGACGTACTCTTCGGCGATTACGTTTTGTTCAACGAAACTGGAAT
AACCAAGATATTTAAAGAGATGATTGGGTATGAGAACAAGGTTTCCGTCAAGCTCGACGTGGTGGTCAAGCCTGGCTCTA
AGGGGGTGGCGGCGCTGAGGGACTTGAGGGCGCTCTTCTGGAAAAGGAAAGCGCCCAAGTGTCCCAAGTGCGGGGGGCCG
ATGGTCAGTATGGGCAAGAAGACCTTAATGAGGAAGTGCAAGAAGTGCGGCTACAAAGCTGAGGTCCTCCCGAAGCTCGA
AATAAAGGTCTTCGAGGGCACAGTCTTCCCCGTTCAAGGGAGGAAGCTGCACTTGGAGGGGGACTACCGCTCCCCTCCGT
GGCCCCCCGAGGGGAGGATATGCGAGAAACCGGGGTGTGCGATCTGGGTCGCACACGGGTTCGATCATCACTAA

Upstream 100 bases:

>100_bases
CCTTGAGCGAGATACAGAAGGTGGTCAACGAAATAAGGAACTTGAAGGGAGTTAGGTCCACCCTGACGCTTATAGCCGTA
GAGGGCAAGCACTTCCAGAG

Downstream 100 bases:

>100_bases
GCGGCGTCAGCAACGCCGACCCAGCTCATCCCCACGCCCAGGCCCTCCGGCAGGACCAGAGCTTTCTTGATTAAGTATAG
GGCCTCCGACACCGCGTCGC

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcription-Associated Protein TFIIS

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MIVALDSFDEPRSGCTTLTASLLALHLASKGFRMLDYPRLVRLNPAVPWKTRGNAAVALEFEGSAEELFEEAKAFLERAP
GRGALAVGEEFPEVYPDAVEKVLDPDEVAKKFEGLWWGRKEALVGALAAGAAEGLNNFELLAYRLPQNLGRPRRCSFHPA
YEALLELAYPSIHESSPEVVCPKGPDPVLLGIRGSHPPLMWAALQLFDGEPFWLATMFRTNQHSYEPSRRAEEYPYEFVQ
KEFEGSYEVRGEDVLFGDYVLFNETGITKIFKEMIGYENKVSVKLDVVVKPGSKGVAALRDLRALFWKRKAPKCPKCGGP
MVSMGKKTLMRKCKKCGYKAEVLPKLEIKVFEGTVFPVQGRKLHLEGDYRSPPWPPEGRICEKPGCAIWVAHGFDHH

Sequences:

>Translated_397_residues
MIVALDSFDEPRSGCTTLTASLLALHLASKGFRMLDYPRLVRLNPAVPWKTRGNAAVALEFEGSAEELFEEAKAFLERAP
GRGALAVGEEFPEVYPDAVEKVLDPDEVAKKFEGLWWGRKEALVGALAAGAAEGLNNFELLAYRLPQNLGRPRRCSFHPA
YEALLELAYPSIHESSPEVVCPKGPDPVLLGIRGSHPPLMWAALQLFDGEPFWLATMFRTNQHSYEPSRRAEEYPYEFVQ
KEFEGSYEVRGEDVLFGDYVLFNETGITKIFKEMIGYENKVSVKLDVVVKPGSKGVAALRDLRALFWKRKAPKCPKCGGP
MVSMGKKTLMRKCKKCGYKAEVLPKLEIKVFEGTVFPVQGRKLHLEGDYRSPPWPPEGRICEKPGCAIWVAHGFDHH
>Mature_397_residues
MIVALDSFDEPRSGCTTLTASLLALHLASKGFRMLDYPRLVRLNPAVPWKTRGNAAVALEFEGSAEELFEEAKAFLERAP
GRGALAVGEEFPEVYPDAVEKVLDPDEVAKKFEGLWWGRKEALVGALAAGAAEGLNNFELLAYRLPQNLGRPRRCSFHPA
YEALLELAYPSIHESSPEVVCPKGPDPVLLGIRGSHPPLMWAALQLFDGEPFWLATMFRTNQHSYEPSRRAEEYPYEFVQ
KEFEGSYEVRGEDVLFGDYVLFNETGITKIFKEMIGYENKVSVKLDVVVKPGSKGVAALRDLRALFWKRKAPKCPKCGGP
MVSMGKKTLMRKCKKCGYKAEVLPKLEIKVFEGTVFPVQGRKLHLEGDYRSPPWPPEGRICEKPGCAIWVAHGFDHH

Specific function: Unknown

COG id: COG1571

COG function: function code R; Predicted DNA-binding protein containing a Zn-ribbon domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44413; Mature: 44413

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVALDSFDEPRSGCTTLTASLLALHLASKGFRMLDYPRLVRLNPAVPWKTRGNAAVALE
CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCEEEEEE
FEGSAEELFEEAKAFLERAPGRGALAVGEEFPEVYPDAVEKVLDPDEVAKKFEGLWWGRK
ECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCHH
EALVGALAAGAAEGLNNFELLAYRLPQNLGRPRRCSFHPAYEALLELAYPSIHESSPEVV
HHHHHHHHHHHHCCCCCHHHHEEHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEE
CPKGPDPVLLGIRGSHPPLMWAALQLFDGEPFWLATMFRTNQHSYEPSRRAEEYPYEFVQ
CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHH
KEFEGSYEVRGEDVLFGDYVLFNETGITKIFKEMIGYENKVSVKLDVVVKPGSKGVAALR
HHHCCCEEECCCEEEEECEEEECCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHH
DLRALFWKRKAPKCPKCGGPMVSMGKKTLMRKCKKCGYKAEVLPKLEIKVFEGTVFPVQG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEECEEEEECC
RKLHLEGDYRSPPWPPEGRICEKPGCAIWVAHGFDHH
CEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCC
>Mature Secondary Structure
MIVALDSFDEPRSGCTTLTASLLALHLASKGFRMLDYPRLVRLNPAVPWKTRGNAAVALE
CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCEEEEEE
FEGSAEELFEEAKAFLERAPGRGALAVGEEFPEVYPDAVEKVLDPDEVAKKFEGLWWGRK
ECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCHH
EALVGALAAGAAEGLNNFELLAYRLPQNLGRPRRCSFHPAYEALLELAYPSIHESSPEVV
HHHHHHHHHHHHCCCCCHHHHEEHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEE
CPKGPDPVLLGIRGSHPPLMWAALQLFDGEPFWLATMFRTNQHSYEPSRRAEEYPYEFVQ
CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHH
KEFEGSYEVRGEDVLFGDYVLFNETGITKIFKEMIGYENKVSVKLDVVVKPGSKGVAALR
HHHCCCEEECCCEEEEECEEEECCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHH
DLRALFWKRKAPKCPKCGGPMVSMGKKTLMRKCKKCGYKAEVLPKLEIKVFEGTVFPVQG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEECEEEEECC
RKLHLEGDYRSPPWPPEGRICEKPGCAIWVAHGFDHH
CEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA