Click here to switch to the map view.

The map label for this gene is rpl13p [H]

Identifier: 156936980

GI number: 156936980

Start: 162644

End: 163090

Strand: Direct

Name: rpl13p [H]

Synonym: Igni_0185

Alternate gene names: 156936980

Gene position: 162644-163090 (Clockwise)

Preceding gene: 156936979

Following gene: 156936981

Centisome position: 12.53

GC content: 55.03

Gene sequence:

>447_bases
ATGAAGAGAGTGGTCGTGATCGATGCTACGAATCAAATAGTAGGTCGGATGGCCTCCCACATCGCTAAGATGTTGCTCGA
GGGGTGGGAGGTCAACGTAATCAACGCGGAGAAAGCCGTGCTGTCCGGCGAACCCACTAGGGTGGTAAAGGGTTACCAAA
TACTGTTAAACGTCAAGACGCACACCAACCCGTACCGGAACAAGATAAAGAGGCCGAGGACGCCTATAGCGATAATAAAG
GACGCGGTTAAGGGTATGTTGCCCAAACACAACACGAGGGGACGGGAGGCCTTGAAGAGGCTAAAGGTCTATATCGGGGA
GCCGGAGTACGTGCCCAAAGAGAACTTGATGAGGTTCCCCGACGCGGACGCGCTGAGGCTCTCCGGAAAGTACATAACTG
TCGGGGAAGTGGCGCGCCGGATGGGATGGAAGGGAGGTGAGGCGTGA

Upstream 100 bases:

>100_bases
AAGATAGAGACGGCGGGTGGCAAGGCGCTCCACATCTTGGAGCTAGTGAAGGAGAACCCCAAGGGTAGCGGCATTAAGAT
TATTACGTGAGGTGGTGGTC

Downstream 100 bases:

>100_bases
TGGTGGACGTGAAGTGGGCAAAGGAACAGCAAGGTAAGGGCGGCGTAAGGATAGTATTGGCCACTGGGAAGAGGAAAAGG
GCCATAGCTAGGGCAATCAT

Product: 50S ribosomal protein L13P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKRVVVIDATNQIVGRMASHIAKMLLEGWEVNVINAEKAVLSGEPTRVVKGYQILLNVKTHTNPYRNKIKRPRTPIAIIK
DAVKGMLPKHNTRGREALKRLKVYIGEPEYVPKENLMRFPDADALRLSGKYITVGEVARRMGWKGGEA

Sequences:

>Translated_148_residues
MKRVVVIDATNQIVGRMASHIAKMLLEGWEVNVINAEKAVLSGEPTRVVKGYQILLNVKTHTNPYRNKIKRPRTPIAIIK
DAVKGMLPKHNTRGREALKRLKVYIGEPEYVPKENLMRFPDADALRLSGKYITVGEVARRMGWKGGEA
>Mature_148_residues
MKRVVVIDATNQIVGRMASHIAKMLLEGWEVNVINAEKAVLSGEPTRVVKGYQILLNVKTHTNPYRNKIKRPRTPIAIIK
DAVKGMLPKHNTRGREALKRLKVYIGEPEYVPKENLMRFPDADALRLSGKYITVGEVARRMGWKGGEA

Specific function: This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly [H]

COG id: COG0102

COG function: function code J; Ribosomal protein L13

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L13P family [H]

Homologues:

Organism=Homo sapiens, GI6912634, Length=145, Percent_Identity=35.8620689655172, Blast_Score=73, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17554234, Length=144, Percent_Identity=37.5, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6324260, Length=144, Percent_Identity=38.1944444444444, Blast_Score=82, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322058, Length=144, Percent_Identity=38.8888888888889, Blast_Score=80, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357053, Length=144, Percent_Identity=36.8055555555556, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005822
- InterPro:   IPR005755 [H]

Pfam domain/function: PF00572 Ribosomal_L13 [H]

EC number: NA

Molecular weight: Translated: 16686; Mature: 16686

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS00783 RIBOSOMAL_L13

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVVVIDATNQIVGRMASHIAKMLLEGWEVNVINAEKAVLSGEPTRVVKGYQILLNVKT
CCEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCHHEEEEEEEEEECC
HTNPYRNKIKRPRTPIAIIKDAVKGMLPKHNTRGREALKRLKVYIGEPEYVPKENLMRFP
CCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCC
DADALRLSGKYITVGEVARRMGWKGGEA
CCCCEEECCCEEEHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRVVVIDATNQIVGRMASHIAKMLLEGWEVNVINAEKAVLSGEPTRVVKGYQILLNVKT
CCEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCHHEEEEEEEEEECC
HTNPYRNKIKRPRTPIAIIKDAVKGMLPKHNTRGREALKRLKVYIGEPEYVPKENLMRFP
CCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCC
DADALRLSGKYITVGEVARRMGWKGGEA
CCCCEEECCCEEEHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7597027 [H]