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The map label for this gene is rpoE [H]

Identifier: 156936879

GI number: 156936879

Start: 81589

End: 82122

Strand: Reverse

Name: rpoE [H]

Synonym: Igni_0084

Alternate gene names: 156936879

Gene position: 82122-81589 (Counterclockwise)

Preceding gene: 156936880

Following gene: 156936878

Centisome position: 6.33

GC content: 54.68

Gene sequence:

>534_bases
TTGTACAGGATCTACCGCTTCAAAGACATGGTTAGAATACCGCCCGAGAGGTTCGGCGAGGACTTGAAGAAGGTCGCTCT
CGAACTCCTCAGGGAGGAGTACGAGGGCGTGATAGACGAGGAGCTCGGCATAATTCTGACAGTAACTGACGTGGACATCT
CCCCCGAGGGCTACATAGTGCCGGGCGACGGAGGCACTTACCACGAGGCCACCTTCACTTTGCTCGCCTTCAAGCCCTTG
AGGAACGAGGTAGTTGAGGGCATAGTAGTTAACGTTACCAAGAACGGGATATACGTTAACATAGGCCCCATAGACGGTAT
GGTGCACAAGGCCCAGCTCGGCGACGAGCGTTTCGAGTACGACGCCGCGACCGGGAGCATGGTAGGCACCAGCACGAAAA
CGGTCATAAAGAGGGGAGACCTCGTTAGGGCTAGGATAGTACAGATTTCGACCAGGAGGGGCCTCAAGGTGGGTATGAGT
ATGAAAGGCCCGTACTTGGGTAAAATTAAGGACGCGGAGGAGGTCAAGCAATGA

Upstream 100 bases:

>100_bases
GGTGGTCGAGAAGCTCAAAGAGTTGGGCAAGCTCTAAAGCCCCTTCTGAGGAGACGAATCTATCAAAAGCTCTTTCTTCT
ACGCCCGCCGGGGCGTGGAG

Downstream 100 bases:

>100_bases
AGAGGAAGCCCTTCTTGGCGTGTATGAACTGTAGGTTCCTCGTACCCCGAAGGCCTGAGGTCACGAGGTGTCCGAGGTGC
GGTTCCACGGACTTGACGGA

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MYRIYRFKDMVRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIVPGDGGTYHEATFTLLAFKPL
RNEVVEGIVVNVTKNGIYVNIGPIDGMVHKAQLGDERFEYDAATGSMVGTSTKTVIKRGDLVRARIVQISTRRGLKVGMS
MKGPYLGKIKDAEEVKQ

Sequences:

>Translated_177_residues
MYRIYRFKDMVRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIVPGDGGTYHEATFTLLAFKPL
RNEVVEGIVVNVTKNGIYVNIGPIDGMVHKAQLGDERFEYDAATGSMVGTSTKTVIKRGDLVRARIVQISTRRGLKVGMS
MKGPYLGKIKDAEEVKQ
>Mature_177_residues
MYRIYRFKDMVRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIVPGDGGTYHEATFTLLAFKPL
RNEVVEGIVVNVTKNGIYVNIGPIDGMVHKAQLGDERFEYDAATGSMVGTSTKTVIKRGDLVRARIVQISTRRGLKVGMS
MKGPYLGKIKDAEEVKQ

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI4505947, Length=134, Percent_Identity=27.6119402985075, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17510349, Length=138, Percent_Identity=26.8115942028986, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320612, Length=173, Percent_Identity=30.635838150289, Blast_Score=68, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322705, Length=101, Percent_Identity=32.6732673267327, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 19766; Mature: 19766

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRIYRFKDMVRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIV
CCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEE
PGDGGTYHEATFTLLAFKPLRNEVVEGIVVNVTKNGIYVNIGPIDGMVHKAQLGDERFEY
ECCCCCCHHHEEEEEEEHHHHHHHHCCEEEEEECCCEEEEECCCCCEEEHHHCCCCCEEE
DAATGSMVGTSTKTVIKRGDLVRARIVQISTRRGLKVGMSMKGPYLGKIKDAEEVKQ
CCCCCCCCCCCHHHHHHCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MYRIYRFKDMVRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIV
CCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEE
PGDGGTYHEATFTLLAFKPLRNEVVEGIVVNVTKNGIYVNIGPIDGMVHKAQLGDERFEY
ECCCCCCHHHEEEEEEEHHHHHHHHCCEEEEEECCCEEEEECCCCCEEEHHHCCCCCEEE
DAATGSMVGTSTKTVIKRGDLVRARIVQISTRRGLKVGMSMKGPYLGKIKDAEEVKQ
CCCCCCCCCCCHHHHHHCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8127719 [H]