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The map label for this gene is ycgE [H]

Identifier: 156936582

GI number: 156936582

Start: 29229

End: 29972

Strand: Direct

Name: ycgE [H]

Synonym: ESA_pESA3p05463

Alternate gene names: 156936582

Gene position: 29229-29972 (Clockwise)

Preceding gene: 156936581

Following gene: 156936584

Centisome position: 22.28

GC content: 59.41

Gene sequence:

>744_bases
ATGGCGTTTTACAGCATTGGCGAGATAGCAGAACGGTGCGGGATCAACCCCGTGACGCTACGCGCCTGGCAGCGGCGCTA
TGGCCTGCTAAAACCTCAACGCAGCGAAGGCGGCCACCGCCAGTTTGATGAAGATGACATTCAGCGTATCGAAGAGATTA
AACGCTGGATCAAAAGCGGCGTGCCGGTCGGCAAAGTGAAAGCGCTGCTGGATAAAGATGTCGTGGTGGGGCCGGAAGCG
TGGAATGTGGTGCAGGAAGAGATGATGGGCGTGGTGCGCCAGGCGCGGCCGGCGACGCTGCGAGCCAAAATCACCGCGCT
GGTGCGTGAAAACGCCGTGGACGGGCTTATCGATAACGTCTTTCTGCCGGTACGCCATCGGTTAAGCCTCGATCAATACA
CCGCACCGTCGATGCGCAGCATGATGGATGGCGCGCTTATCGAATACGCCACGCTGTTTCTGGCCGAAGCGCGCAAAAAA
ACCACCAAAGAAGCGCTGCTGATGGGCTGGGGCAATGTGGATCGCGCCCGCCTGTGGCTGGAAGCCTGCCGTCTGGCGCA
CCAGGGCTGGCATATTGATTTACTCGCCGAGCCGCTCGATTTGCCGCACCCGGAGCTCTTTCCCAATCAGCACTTTTTCG
TCTGGACTGACGAGCCGCTCAACGCTGAGCAGCAGGAGCGCGCCGCGCACTGGAAGGCGCAGGGTTACGCCATTACTTTC
CTGACCGGGAATAAATCCGCGTAA

Upstream 100 bases:

>100_bases
TTAACTTCACGGTTGTACAATTATTAAAAATTGTACAAGCTAAGGGGAGTTAACTTTTTGAGAGATTCCTGTGTCGGTTT
TGATCGTGAGTGAAGATCCT

Downstream 100 bases:

>100_bases
CGGTAAACATGTCGGTCATTCACTGAACCGCAAAAAGCCCGGCACCGGCCGGGCTTTTTGTTGCGCTTAGAACAGCGCTC
AGAACGTTTCCCAGCTTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MAFYSIGEIAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEDDIQRIEEIKRWIKSGVPVGKVKALLDKDVVVGPEA
WNVVQEEMMGVVRQARPATLRAKITALVRENAVDGLIDNVFLPVRHRLSLDQYTAPSMRSMMDGALIEYATLFLAEARKK
TTKEALLMGWGNVDRARLWLEACRLAHQGWHIDLLAEPLDLPHPELFPNQHFFVWTDEPLNAEQQERAAHWKAQGYAITF
LTGNKSA

Sequences:

>Translated_247_residues
MAFYSIGEIAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEDDIQRIEEIKRWIKSGVPVGKVKALLDKDVVVGPEA
WNVVQEEMMGVVRQARPATLRAKITALVRENAVDGLIDNVFLPVRHRLSLDQYTAPSMRSMMDGALIEYATLFLAEARKK
TTKEALLMGWGNVDRARLWLEACRLAHQGWHIDLLAEPLDLPHPELFPNQHFFVWTDEPLNAEQQERAAHWKAQGYAITF
LTGNKSA
>Mature_246_residues
AFYSIGEIAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEDDIQRIEEIKRWIKSGVPVGKVKALLDKDVVVGPEAW
NVVQEEMMGVVRQARPATLRAKITALVRENAVDGLIDNVFLPVRHRLSLDQYTAPSMRSMMDGALIEYATLFLAEARKKT
TKEALLMGWGNVDRARLWLEACRLAHQGWHIDLLAEPLDLPHPELFPNQHFFVWTDEPLNAEQQERAAHWKAQGYAITFL
TGNKSA

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=240, Percent_Identity=62.5, Blast_Score=305, Evalue=3e-84,
Organism=Escherichia coli, GI1788448, Length=238, Percent_Identity=45.7983193277311, Blast_Score=215, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 28180; Mature: 28049

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFYSIGEIAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEDDIQRIEEIKRWIKSG
CCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
VPVGKVKALLDKDVVVGPEAWNVVQEEMMGVVRQARPATLRAKITALVRENAVDGLIDNV
CCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FLPVRHRLSLDQYTAPSMRSMMDGALIEYATLFLAEARKKTTKEALLMGWGNVDRARLWL
HHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EACRLAHQGWHIDLLAEPLDLPHPELFPNQHFFVWTDEPLNAEQQERAAHWKAQGYAITF
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEE
LTGNKSA
EECCCCC
>Mature Secondary Structure 
AFYSIGEIAERCGINPVTLRAWQRRYGLLKPQRSEGGHRQFDEDDIQRIEEIKRWIKSG
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
VPVGKVKALLDKDVVVGPEAWNVVQEEMMGVVRQARPATLRAKITALVRENAVDGLIDNV
CCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FLPVRHRLSLDQYTAPSMRSMMDGALIEYATLFLAEARKKTTKEALLMGWGNVDRARLWL
HHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EACRLAHQGWHIDLLAEPLDLPHPELFPNQHFFVWTDEPLNAEQQERAAHWKAQGYAITF
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEE
LTGNKSA
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]