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The map label for this gene is racD

Identifier: 15674208

GI number: 15674208

Start: 2309217

End: 2309939

Strand: Reverse

Name: racD

Synonym: L92665

Alternate gene names: NA

Gene position: 2309939-2309217 (Counterclockwise)

Preceding gene: 15674209

Following gene: 15674207

Centisome position: 97.65

GC content: 34.99

Gene sequence:

>723_bases
ATGGAAAACTTCTTTACAATCTTGGGGGGAATGGGTACTCTTGCGACTGAAAGTTTTATTCATACGCTGAATGAACGAAC
AGAGGCTTATCGTGACCAAGATTATTTGAATTATATCGTAGTTAATCATGCGACAATTCCTGACCGAACAGATTATATCA
AGAATCCTTCATTGGAAAATCCAGAAGAAAAATTGATTGATGATATTAAGATTCACAGTCAACTTTCACCAAAATTTTTC
GTTGTTCCTTGTAACACGGCTCATTATTATTTTGATGAGATGCAAAAAGCAACAGAAATTCCGATTCTACATATGCCACG
CATTGCCGTTGATAGTATTAGCCATCACTTTCCAAAAGCTAAGAGGGTGGCCGTGCTAGCGACTGAAGGAACAATTTTGA
CAGGAGTTTATCGTAAGGCCTTGGAAGAACAAGGATATGAAGCGGTAATTCCAGATGATCAATTGCAAGAAAAGGTAAAT
CGCTTGATTTATCAAGAAGTTAAGGAAAATAGAAATCTTAATTTTGAGCTTTATAAGGAAATTTTGTCTGATGTCGCGTC
AGAAATGAATTGTGAAGTAACCATTTTAGGTTGTACAGAATTGTCAGTCTTATATGAAGCCTATGATTTGACAAAAGAGT
ACAATATAATAGATGCACAAGCTGAAACTGTACATCGAACAATATCTATGATGGGAAAAAAAGATTTATTAGATGACTAT
TAA

Upstream 100 bases:

>100_bases
CGTTATCTTTTGATGAAATATGCATTCCATCGCTATATTGGGGCATTTAAAACGTACTTTCACAAATAAAAATTAAGAAT
AAGAAGGACAGGGGGATATA

Downstream 100 bases:

>100_bases
AAAGAAAAAACTTTTTAAAAAAAGAATCGTAATTTTATTTGTTCTTGTGGCCTGTCTACTTATTTTTACTTTAATTGTAA
ATCCTAAGAATCAAGAAGAT

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MENFFTILGGMGTLATESFIHTLNERTEAYRDQDYLNYIVVNHATIPDRTDYIKNPSLENPEEKLIDDIKIHSQLSPKFF
VVPCNTAHYYFDEMQKATEIPILHMPRIAVDSISHHFPKAKRVAVLATEGTILTGVYRKALEEQGYEAVIPDDQLQEKVN
RLIYQEVKENRNLNFELYKEILSDVASEMNCEVTILGCTELSVLYEAYDLTKEYNIIDAQAETVHRTISMMGKKDLLDDY

Sequences:

>Translated_240_residues
MENFFTILGGMGTLATESFIHTLNERTEAYRDQDYLNYIVVNHATIPDRTDYIKNPSLENPEEKLIDDIKIHSQLSPKFF
VVPCNTAHYYFDEMQKATEIPILHMPRIAVDSISHHFPKAKRVAVLATEGTILTGVYRKALEEQGYEAVIPDDQLQEKVN
RLIYQEVKENRNLNFELYKEILSDVASEMNCEVTILGCTELSVLYEAYDLTKEYNIIDAQAETVHRTISMMGKKDLLDDY
>Mature_240_residues
MENFFTILGGMGTLATESFIHTLNERTEAYRDQDYLNYIVVNHATIPDRTDYIKNPSLENPEEKLIDDIKIHSQLSPKFF
VVPCNTAHYYFDEMQKATEIPILHMPRIAVDSISHHFPKAKRVAVLATEGTILTGVYRKALEEQGYEAVIPDDQLQEKVN
RLIYQEVKENRNLNFELYKEILSDVASEMNCEVTILGCTELSVLYEAYDLTKEYNIIDAQAETVHRTISMMGKKDLLDDY

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.13 [H]

Molecular weight: Translated: 27680; Mature: 27680

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFFTILGGMGTLATESFIHTLNERTEAYRDQDYLNYIVVNHATIPDRTDYIKNPSLEN
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHCCCCCCCC
PEEKLIDDIKIHSQLSPKFFVVPCNTAHYYFDEMQKATEIPILHMPRIAVDSISHHFPKA
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCC
KRVAVLATEGTILTGVYRKALEEQGYEAVIPDDQLQEKVNRLIYQEVKENRNLNFELYKE
CEEEEEEECCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ILSDVASEMNCEVTILGCTELSVLYEAYDLTKEYNIIDAQAETVHRTISMMGKKDLLDDY
HHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MENFFTILGGMGTLATESFIHTLNERTEAYRDQDYLNYIVVNHATIPDRTDYIKNPSLEN
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHCCCCCCCC
PEEKLIDDIKIHSQLSPKFFVVPCNTAHYYFDEMQKATEIPILHMPRIAVDSISHHFPKA
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCC
KRVAVLATEGTILTGVYRKALEEQGYEAVIPDDQLQEKVNRLIYQEVKENRNLNFELYKE
CEEEEEEECCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ILSDVASEMNCEVTILGCTELSVLYEAYDLTKEYNIIDAQAETVHRTISMMGKKDLLDDY
HHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2054383; 1907199 [H]