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The map label for this gene is rliDB

Identifier: 15674131

GI number: 15674131

Start: 2217579

End: 2218112

Strand: Direct

Name: rliDB

Synonym: L01009

Alternate gene names: 15674131

Gene position: 2217579-2218112 (Clockwise)

Preceding gene: 15674126

Following gene: 15674136

Centisome position: 93.74

GC content: 34.27

Gene sequence:

>534_bases
TTGGGGGTCACTACAAAATATGGCCCAATTATTTTATGCCATAAACCTAAAAGTAAAAAAATAGCCGCCAGTTATGCAGA
AAGAAAAATTGGATATCGAAACGCTCTAGAATGGCTTCAAGAACAAAATTGTAATAATATTGGGTTTCTCTTTGCACGTT
ATAAAAGTCCAACTACATCTGTTACTCTCCAAACCTATAAAGAAATATACGAAGAAAAAGTAAGAGATGAGCAAATAAAA
ACGGGTGCAGTATCTTCAGCAGACGGTTACAAATTGGGGCTCCAACTTACACAATTTGATGCAATATTTGCTAATTCTGA
TGATATTGCTGCTAATGTTTGGCGTTGGTTTGAACAACAAAAAATACCTAAACCTGTTATTATTGGCCAAGAATCCTTAA
TATCTGGTCAGGTTCTCAATATTCCAACCGTAAATAATCACTTTCAACAAGTAGGACGTTGTGCATTTGAATTGGCTACT
TCCAAAGAAATTCAGCAACTAGCAATTAAATCAGAGTTTATTCTAAATCGTTAA

Upstream 100 bases:

>100_bases
TTGCCAGATAAATAATCTTGAATAATGCGTTGTTTTAATTCTATGGAATATTTGACCATAAGAAAAGACCTCCGAAATAT
AGATTTGAAAAGTCTATATT

Downstream 100 bases:

>100_bases
ATAAAAAAAGGCCCGAGAGGTCTTTTTTATTTATTTATACATCCTATCTCTTGAATCTCGTTAGTGAGATAAAAAAAGAG
GAGCCATAGCTCCTCCAGTT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MGVTTKYGPIILCHKPKSKKIAASYAERKIGYRNALEWLQEQNCNNIGFLFARYKSPTTSVTLQTYKEIYEEKVRDEQIK
TGAVSSADGYKLGLQLTQFDAIFANSDDIAANVWRWFEQQKIPKPVIIGQESLISGQVLNIPTVNNHFQQVGRCAFELAT
SKEIQQLAIKSEFILNR

Sequences:

>Translated_177_residues
MGVTTKYGPIILCHKPKSKKIAASYAERKIGYRNALEWLQEQNCNNIGFLFARYKSPTTSVTLQTYKEIYEEKVRDEQIK
TGAVSSADGYKLGLQLTQFDAIFANSDDIAANVWRWFEQQKIPKPVIIGQESLISGQVLNIPTVNNHFQQVGRCAFELAT
SKEIQQLAIKSEFILNR
>Mature_176_residues
GVTTKYGPIILCHKPKSKKIAASYAERKIGYRNALEWLQEQNCNNIGFLFARYKSPTTSVTLQTYKEIYEEKVRDEQIKT
GAVSSADGYKLGLQLTQFDAIFANSDDIAANVWRWFEQQKIPKPVIIGQESLISGQVLNIPTVNNHFQQVGRCAFELATS
KEIQQLAIKSEFILNR

Specific function: Transcriptional regulator involved in catabolite repression of several operons [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 20091; Mature: 19960

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTTKYGPIILCHKPKSKKIAASYAERKIGYRNALEWLQEQNCNNIGFLFARYKSPTTS
CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCE
VTLQTYKEIYEEKVRDEQIKTGAVSSADGYKLGLQLTQFDAIFANSDDIAANVWRWFEQQ
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHEEEEECCCCHHHHHHHHHHHH
KIPKPVIIGQESLISGQVLNIPTVNNHFQQVGRCAFELATSKEIQQLAIKSEFILNR
CCCCCEEECCHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVTTKYGPIILCHKPKSKKIAASYAERKIGYRNALEWLQEQNCNNIGFLFARYKSPTTS
CCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCE
VTLQTYKEIYEEKVRDEQIKTGAVSSADGYKLGLQLTQFDAIFANSDDIAANVWRWFEQQ
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHEEEEECCCCHHHHHHHHHHHH
KIPKPVIIGQESLISGQVLNIPTVNNHFQQVGRCAFELATSKEIQQLAIKSEFILNR
CCCCCEEECCHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8011666; 9457849 [H]