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The map label for this gene is rliDA

Identifier: 15674126

GI number: 15674126

Start: 2214455

End: 2214865

Strand: Direct

Name: rliDA

Synonym: L0225

Alternate gene names: 15674126

Gene position: 2214455-2214865 (Clockwise)

Preceding gene: 15674125

Following gene: 15674131

Centisome position: 93.61

GC content: 36.25

Gene sequence:

>411_bases
ATGACCTCTTTATCCGATTTATCGAAACTTAGCGGCTATTCAAAAGCTACCATCTCTCGTGCCCTTTCTGGGAATGGCTA
TGTTTCAAAAGAAACACGTAAAATTATTTTGGGCTTAGCTAAAGAACTTGACTATACTCCCAATGCAATCGCACAGGATT
TATCAGCTGGTACAACAAAAAATATTGGAGTTGTCCTCCCCTACGTCAAGCATCCGTTTTTTGGGCAAATATTAGAAGGG
ATTCTGGATAAAAGTTTTGAAACTGGCTATAAAATCGTCATCCTCCCTTCAAATTACGACCAAAATCTAGAAATTAAATA
CTTAGAACAACTCCGTAAAAAAGCATTTGAAGCATTAATTTTTACCTCAAGGGAAGTTTCTGAACAAACCGTTCATAAAT
ACCAAAAATGA

Upstream 100 bases:

>100_bases
AGGTCAAAAAACATGTTAAAATGGTTGTAGCAAAAAATACTGAACATGGAGTCGCTGAAGCAATATCAGCTATTAATACC
ATTAACGAACAGGTGATATA

Downstream 100 bases:

>100_bases
TGTGCACCCCAAAAGTTAGACTTTTTTGGAAAGTCAACGTGGAAAGTCAACGAAAAACTAGACACGGAGTTAAGAGAATT
TAAGAATTATATTTTTCAAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTSLSDLSKLSGYSKATISRALSGNGYVSKETRKIILGLAKELDYTPNAIAQDLSAGTTKNIGVVLPYVKHPFFGQILEG
ILDKSFETGYKIVILPSNYDQNLEIKYLEQLRKKAFEALIFTSREVSEQTVHKYQK

Sequences:

>Translated_136_residues
MTSLSDLSKLSGYSKATISRALSGNGYVSKETRKIILGLAKELDYTPNAIAQDLSAGTTKNIGVVLPYVKHPFFGQILEG
ILDKSFETGYKIVILPSNYDQNLEIKYLEQLRKKAFEALIFTSREVSEQTVHKYQK
>Mature_135_residues
TSLSDLSKLSGYSKATISRALSGNGYVSKETRKIILGLAKELDYTPNAIAQDLSAGTTKNIGVVLPYVKHPFFGQILEGI
LDKSFETGYKIVILPSNYDQNLEIKYLEQLRKKAFEALIFTSREVSEQTVHKYQK

Specific function: Transcriptional regulator involved in catabolite repression of several operons [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=136, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1788474, Length=135, Percent_Identity=31.1111111111111, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1787948, Length=130, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789202, Length=128, Percent_Identity=28.125, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1789068, Length=121, Percent_Identity=34.7107438016529, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI1786268, Length=123, Percent_Identity=27.6422764227642, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI48994940, Length=128, Percent_Identity=31.25, Blast_Score=63, Evalue=6e-12,
Organism=Escherichia coli, GI1790715, Length=129, Percent_Identity=28.6821705426357, Blast_Score=61, Evalue=3e-11,
Organism=Escherichia coli, GI1787580, Length=129, Percent_Identity=28.6821705426357, Blast_Score=59, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 15223; Mature: 15091

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSDLSKLSGYSKATISRALSGNGYVSKETRKIILGLAKELDYTPNAIAQDLSAGTTK
CCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
NIGVVLPYVKHPFFGQILEGILDKSFETGYKIVILPSNYDQNLEIKYLEQLRKKAFEALI
CCCEEEHHHCCCHHHHHHHHHHHCHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
FTSREVSEQTVHKYQK
HCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TSLSDLSKLSGYSKATISRALSGNGYVSKETRKIILGLAKELDYTPNAIAQDLSAGTTK
CCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
NIGVVLPYVKHPFFGQILEGILDKSFETGYKIVILPSNYDQNLEIKYLEQLRKKAFEALI
CCCEEEHHHCCCHHHHHHHHHHHCHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
FTSREVSEQTVHKYQK
HCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8011666; 9457849 [H]