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The map label for this gene is rbsR

Identifier: 15673622

GI number: 15673622

Start: 1687322

End: 1688305

Strand: Reverse

Name: rbsR

Synonym: L0145

Alternate gene names: 15673622

Gene position: 1688305-1687322 (Counterclockwise)

Preceding gene: 15673623

Following gene: 15673621

Centisome position: 71.37

GC content: 35.37

Gene sequence:

>984_bases
ATGACAACAATCAAGCAAGTTGCGCTTGAAGCAGGAGTTTCAAAGTCCACTGTTTCACGTTTTATTGCTCAGAATGGCTA
TGTAAGTGATGAAGCCAGAGAAAAAATTGAACGAGCAATTAAAAAACTAAATTTCAGACCCAATCTTTCTGCCCAATCTT
TAAAAACTAAAAAGAACCAGCTTGTTGGACTATTATTGCCAGATATCTCCAATCCTTTTTTCCCAATGCTAGCCAAAGGA
GCAGAGGAATTTTTAAAAGAAAAAGGTTATCGTGTGATGCTCGGAAATATTGGTGAAAAGAATCAATCTGAGCAAGATTA
TTTGAAAGTTTTGATTCAAAGTAATGCTGCTGGCATCATTTCAACCCATGATTTTAAAGAAGACTTTCCTGATTTGGATA
TTCCAACTGTAATCGTGGACCGAGTAGGCCATAAAAGTAACTATGGTGTTTTTTCGGACAATGAGTCAGGTGGACGATTA
GCAGCAAAAGTGATTGTAACAGCAGGAGCAAAAAAAGTTGCTGTAGTCAGCGGTCCTTTGAATGCCACAAATATCAATAA
TCGTTTTAAATCAAGTATTGCTTATTTAAAAGAAAAACAAGTTGATTTTAAAGCTTTTTACAGTCAAAGTTATGATTTTG
AAGAAATTCAGAAAGAGGCGAGAGAAGTGCTTGCCAATGAAGAAAACTTTGATAGTATTATTGCACCATCGGATATTCAT
GCTATGGCTTATATCCACGAAATTCATCGTTTAAATAAGAAAATTCCTGAGGATATTCAAATTATTGGTTATGACGATAT
TCAAATGAGCCAATTCATTTATCCAGCACTCTCAACCATTCATCAATCTGCTTATCAGATGGGGCTTGAAGCTGCTCAAC
TTATTTATAAAATCGCGACTGATCAAGCAATTGAGAAGTCTAAAATTGAACTCCCTGTTCATTATGTAGCGCGTGAAACA
ATTCGACAAAAGAGAAAAGAATGA

Upstream 100 bases:

>100_bases
TATTAAAACGAAATATAAAAAGGATTGACAAATTTAATGAAAACGGATACAATTATAAATGTAAATATGAGAACGTTCCC
ACACGTGAAAGGAGGAAGTA

Downstream 100 bases:

>100_bases
GGAAAAATTAATGACAAAAGTAAGTGTTATAGGAAGTATTTCAATGGATTTAGTCACAAGGACTAACCGAGTGCCGAATG
CTGGAGAAACAGTATTTGGT

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MTTIKQVALEAGVSKSTVSRFIAQNGYVSDEAREKIERAIKKLNFRPNLSAQSLKTKKNQLVGLLLPDISNPFFPMLAKG
AEEFLKEKGYRVMLGNIGEKNQSEQDYLKVLIQSNAAGIISTHDFKEDFPDLDIPTVIVDRVGHKSNYGVFSDNESGGRL
AAKVIVTAGAKKVAVVSGPLNATNINNRFKSSIAYLKEKQVDFKAFYSQSYDFEEIQKEAREVLANEENFDSIIAPSDIH
AMAYIHEIHRLNKKIPEDIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIATDQAIEKSKIELPVHYVARET
IRQKRKE

Sequences:

>Translated_327_residues
MTTIKQVALEAGVSKSTVSRFIAQNGYVSDEAREKIERAIKKLNFRPNLSAQSLKTKKNQLVGLLLPDISNPFFPMLAKG
AEEFLKEKGYRVMLGNIGEKNQSEQDYLKVLIQSNAAGIISTHDFKEDFPDLDIPTVIVDRVGHKSNYGVFSDNESGGRL
AAKVIVTAGAKKVAVVSGPLNATNINNRFKSSIAYLKEKQVDFKAFYSQSYDFEEIQKEAREVLANEENFDSIIAPSDIH
AMAYIHEIHRLNKKIPEDIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIATDQAIEKSKIELPVHYVARET
IRQKRKE
>Mature_326_residues
TTIKQVALEAGVSKSTVSRFIAQNGYVSDEAREKIERAIKKLNFRPNLSAQSLKTKKNQLVGLLLPDISNPFFPMLAKGA
EEFLKEKGYRVMLGNIGEKNQSEQDYLKVLIQSNAAGIISTHDFKEDFPDLDIPTVIVDRVGHKSNYGVFSDNESGGRLA
AKVIVTAGAKKVAVVSGPLNATNINNRFKSSIAYLKEKQVDFKAFYSQSYDFEEIQKEAREVLANEENFDSIIAPSDIHA
MAYIHEIHRLNKKIPEDIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIATDQAIEKSKIELPVHYVARETI
RQKRKE

Specific function: Transcriptional repressor for the ribose rbsDACBK operon

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790194, Length=322, Percent_Identity=29.8136645962733, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787948, Length=331, Percent_Identity=25.3776435045317, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1790369, Length=317, Percent_Identity=26.1829652996845, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1788474, Length=319, Percent_Identity=27.2727272727273, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789068, Length=303, Percent_Identity=25.7425742574257, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789202, Length=293, Percent_Identity=25.2559726962457, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI48994940, Length=312, Percent_Identity=25.9615384615385, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786540, Length=330, Percent_Identity=24.2424242424242, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787580, Length=311, Percent_Identity=25.4019292604502, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790715, Length=307, Percent_Identity=23.1270358306189, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787906, Length=229, Percent_Identity=25.764192139738, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786268, Length=294, Percent_Identity=22.7891156462585, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSR_LACLA (Q9CF41)

Other databases:

- EMBL:   AE005176
- PIR:   H86829
- RefSeq:   NP_267796.1
- ProteinModelPortal:   Q9CF41
- SMR:   Q9CF41
- GeneID:   1115300
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L0145
- NMPDR:   fig|272623.1.peg.1682
- HOGENOM:   HBG753640
- OMA:   TIRQKRK
- ProtClustDB:   CLSK697854
- BioCyc:   LLAC272623:L0145-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761
- SMART:   SM00354

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 36775; Mature: 36644

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00356 HTH_LACI_1; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIKQVALEAGVSKSTVSRFIAQNGYVSDEAREKIERAIKKLNFRPNLSAQSLKTKKNQ
CCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LVGLLLPDISNPFFPMLAKGAEEFLKEKGYRVMLGNIGEKNQSEQDYLKVLIQSNAAGII
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
STHDFKEDFPDLDIPTVIVDRVGHKSNYGVFSDNESGGRLAAKVIVTAGAKKVAVVSGPL
ECCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEHEEEECCCCEEEEEECCC
NATNINNRFKSSIAYLKEKQVDFKAFYSQSYDFEEIQKEAREVLANEENFDSIIAPSDIH
CCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AMAYIHEIHRLNKKIPEDIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIAT
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQAIEKSKIELPVHYVARETIRQKRKE
HHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTIKQVALEAGVSKSTVSRFIAQNGYVSDEAREKIERAIKKLNFRPNLSAQSLKTKKNQ
CHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LVGLLLPDISNPFFPMLAKGAEEFLKEKGYRVMLGNIGEKNQSEQDYLKVLIQSNAAGII
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
STHDFKEDFPDLDIPTVIVDRVGHKSNYGVFSDNESGGRLAAKVIVTAGAKKVAVVSGPL
ECCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEHEEEECCCCEEEEEECCC
NATNINNRFKSSIAYLKEKQVDFKAFYSQSYDFEEIQKEAREVLANEENFDSIIAPSDIH
CCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AMAYIHEIHRLNKKIPEDIQIIGYDDIQMSQFIYPALSTIHQSAYQMGLEAAQLIYKIAT
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQAIEKSKIELPVHYVARETIRQKRKE
HHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471