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The map label for this gene is rlrC

Identifier: 15673288

GI number: 15673288

Start: 1340924

End: 1341745

Strand: Direct

Name: rlrC

Synonym: L0216

Alternate gene names: 15673288

Gene position: 1340924-1341745 (Clockwise)

Preceding gene: 15673287

Following gene: 15673291

Centisome position: 56.68

GC content: 31.63

Gene sequence:

>822_bases
ATGAATACACATCAACTTGAAATTTTTTATCATGTCGCAAAATTTCAGTCAATATCAAGGGCAGCAGAGGCACTTTATAT
CAGTCAGCCAGCTGTCAGTAGCCAAATCAAAAAACTTGAGTCTGCTTATGGTGTTCACCTAATCGAAAAAAATGGTCAGG
GAATCCAGCTGACAGCTCCTGGAATTCAGCTTTATGAAATTATTCGCTCCTTTTTTGAGAACGCTATTGTTTCCGCAGAA
TCACTCTTAAAAAATTCTTCTGTTCTCCGGATTTCAGGAAATTTTTTAATGACAAATTTTGTAATTCCTCAAATTTTCGA
TCATGAAACTAATCAGGCTAACTTAATTATCAAAAGCACTTCTTCTTTTAATGCGCTGACAGAATTGAAAAATGGTTACT
GTGATTTGGCACTTATTAGTGCTTCTAGTCAGCCCGTTCTGTCAGCAGATATTTCGGTCAAAAAAATTTTTGATGATGAA
ATTATTTCTGTCAGTAAAAAACCACTAGAAAGAGAAGTCACTTCTCTTATTGTCAGTAAAAGTAAAATTGATGTTTACAA
AATATTGGAAAAAAATAATCCATTATTTTCACACTTACCTTATACTGCAGTTGAGTCGACTCAAGATGCCCTCTCAAATA
TTAATATTAATAAAAATAGTGCAACTTTCATTTCTGCTCGTTTTCTAAAATATTTTGAAAAAGATTATAACTATCACTAT
ACTGGAGTTAAAAATGGTTTTTATGCCCTCTATAAATCAAACAATTTTCATACTGATGAAATTTTAAAGCTTATCGAAAT
GATAAAGTCTTCTACTAAATAA

Upstream 100 bases:

>100_bases
TGGAATTATATGCCAATGAAATTGGTGAAAAATATGTCAATCGTTTATAAGGTCTTAATAAGACTACTATCAATTACAAG
TGAAAGTTAAATAGATATCA

Downstream 100 bases:

>100_bases
ATTAAAAAACAATCAACTACTGAGTTGATTGTTTTTATCATTAGATATAACGTTTCAAAAAGTTTAAAAGATTAGGCCAA
ATGTCATCAATATAAGCCTC

Product: LysR family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNTHQLEIFYHVAKFQSISRAAEALYISQPAVSSQIKKLESAYGVHLIEKNGQGIQLTAPGIQLYEIIRSFFENAIVSAE
SLLKNSSVLRISGNFLMTNFVIPQIFDHETNQANLIIKSTSSFNALTELKNGYCDLALISASSQPVLSADISVKKIFDDE
IISVSKKPLEREVTSLIVSKSKIDVYKILEKNNPLFSHLPYTAVESTQDALSNININKNSATFISARFLKYFEKDYNYHY
TGVKNGFYALYKSNNFHTDEILKLIEMIKSSTK

Sequences:

>Translated_273_residues
MNTHQLEIFYHVAKFQSISRAAEALYISQPAVSSQIKKLESAYGVHLIEKNGQGIQLTAPGIQLYEIIRSFFENAIVSAE
SLLKNSSVLRISGNFLMTNFVIPQIFDHETNQANLIIKSTSSFNALTELKNGYCDLALISASSQPVLSADISVKKIFDDE
IISVSKKPLEREVTSLIVSKSKIDVYKILEKNNPLFSHLPYTAVESTQDALSNININKNSATFISARFLKYFEKDYNYHY
TGVKNGFYALYKSNNFHTDEILKLIEMIKSSTK
>Mature_273_residues
MNTHQLEIFYHVAKFQSISRAAEALYISQPAVSSQIKKLESAYGVHLIEKNGQGIQLTAPGIQLYEIIRSFFENAIVSAE
SLLKNSSVLRISGNFLMTNFVIPQIFDHETNQANLIIKSTSSFNALTELKNGYCDLALISASSQPVLSADISVKKIFDDE
IISVSKKPLEREVTSLIVSKSKIDVYKILEKNNPLFSHLPYTAVESTQDALSNININKNSATFISARFLKYFEKDYNYHY
TGVKNGFYALYKSNNFHTDEILKLIEMIKSSTK

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=249, Percent_Identity=26.9076305220884, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30741; Mature: 30741

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTHQLEIFYHVAKFQSISRAAEALYISQPAVSSQIKKLESAYGVHLIEKNGQGIQLTAP
CCCEEEEEEHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCEEEEECCCCEEEEECC
GIQLYEIIRSFFENAIVSAESLLKNSSVLRISGNFLMTNFVIPQIFDHETNQANLIIKST
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCHHHHCCCCCCCEEEEEEC
SSFNALTELKNGYCDLALISASSQPVLSADISVKKIFDDEIISVSKKPLEREVTSLIVSK
CCHHHHHHHCCCCCCEEEEECCCCCEEECCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHC
SKIDVYKILEKNNPLFSHLPYTAVESTQDALSNININKNSATFISARFLKYFEKDYNYHY
CCHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
TGVKNGFYALYKSNNFHTDEILKLIEMIKSSTK
EECCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTHQLEIFYHVAKFQSISRAAEALYISQPAVSSQIKKLESAYGVHLIEKNGQGIQLTAP
CCCEEEEEEHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCEEEEECCCCEEEEECC
GIQLYEIIRSFFENAIVSAESLLKNSSVLRISGNFLMTNFVIPQIFDHETNQANLIIKST
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCHHHHCCCCCCCEEEEEEC
SSFNALTELKNGYCDLALISASSQPVLSADISVKKIFDDEIISVSKKPLEREVTSLIVSK
CCHHHHHHHCCCCCCEEEEECCCCCEEECCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHC
SKIDVYKILEKNNPLFSHLPYTAVESTQDALSNININKNSATFISARFLKYFEKDYNYHY
CCHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
TGVKNGFYALYKSNNFHTDEILKLIEMIKSSTK
EECCCCEEEEEECCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA