Click here to switch to the map view.

The map label for this gene is yljC

Identifier: 15673158

GI number: 15673158

Start: 1192577

End: 1193398

Strand: Direct

Name: yljC

Synonym: L192289

Alternate gene names: 15673158

Gene position: 1192577-1193398 (Clockwise)

Preceding gene: 15673156

Following gene: 15673159

Centisome position: 50.41

GC content: 32.36

Gene sequence:

>822_bases
ATGAAAATCGAACAAGTCATTGAAGAAAAATATAAAACTCTTACCAAATCTGAGAAAAAAATTGCTAACTATGTATTAGA
GTCACCTAATCATATTATTTATGGAACGATGAATGATATTAAAAGTGAGATTCATGTAGGGGATGCGACAATTATCAGAT
TCTGTCAAAAATTAGGTTTTTCAGGATTCTCAGATTTAAAAATTGAGATAGCAAAAGAAGACTATTCTCAAAAAGAATCT
CAGGCTAAAGATAGTGAGCTATTCTTTGACGAAAAAGAGAGAAAAATTGTCAACAGTCTAGAAACAACAAAAAGAAAATT
GTCTATAGAACTATTGGAGAGGAGTTCTGCATTACTCTCAAATGCCTCAGCAATTTATATTTTTGGTGTTGGCTTAAGCG
GAAATACGGCAAAAGATTTGGAGGCAATGTTCTTACGGATTGGTATTCAAGCTAAAGCAATTAGTGATACTCACTTTCAG
GCGCAAACGGCCGCTATTCTAAAAAACACTGATTTGGTTATTGGAATTTCTTTATCAGGAAGGACTTTAGATTTATATGA
ATCGCTTAAAATCGCTAAAGGACATACAGCTAAAATCCTTTCAATAACCAGTAATTTAGTGTCTCCAATTGCTCAGCTTT
CAGACATTGTGCTACAAACAACAGCTGAAGAATTTTTTGATGGTGGTTCTTTATCTGGTAAAATATCACAGTTATATATT
TGTGAACTCCTAGTAAGACATCACGAAAAGATTTTTGAAAATGAGGCTTTAAAAAGTCGTGAAGAAATTATCAGAGCGGT
TATTAGTAAATCAATAGATTAA

Upstream 100 bases:

>100_bases
ATGCGCTTACATTTTTGTCAACTTTTTCTAATTAATTATAAAAAATATAAAAAAATAGTAAAATAAAGAAAAAGCTAACT
ACATTTACCAAAGGGATATT

Downstream 100 bases:

>100_bases
TTATTTGGTGATTAGTAATCTCGCGTAAAAAATTCAGCTTTATATTTACCTATCTACTGTTTAAATTTGATTTTCTTTCA
CCGTGATGAAGATATTAAAG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKIEQVIEEKYKTLTKSEKKIANYVLESPNHIIYGTMNDIKSEIHVGDATIIRFCQKLGFSGFSDLKIEIAKEDYSQKES
QAKDSELFFDEKERKIVNSLETTKRKLSIELLERSSALLSNASAIYIFGVGLSGNTAKDLEAMFLRIGIQAKAISDTHFQ
AQTAAILKNTDLVIGISLSGRTLDLYESLKIAKGHTAKILSITSNLVSPIAQLSDIVLQTTAEEFFDGGSLSGKISQLYI
CELLVRHHEKIFENEALKSREEIIRAVISKSID

Sequences:

>Translated_273_residues
MKIEQVIEEKYKTLTKSEKKIANYVLESPNHIIYGTMNDIKSEIHVGDATIIRFCQKLGFSGFSDLKIEIAKEDYSQKES
QAKDSELFFDEKERKIVNSLETTKRKLSIELLERSSALLSNASAIYIFGVGLSGNTAKDLEAMFLRIGIQAKAISDTHFQ
AQTAAILKNTDLVIGISLSGRTLDLYESLKIAKGHTAKILSITSNLVSPIAQLSDIVLQTTAEEFFDGGSLSGKISQLYI
CELLVRHHEKIFENEALKSREEIIRAVISKSID
>Mature_273_residues
MKIEQVIEEKYKTLTKSEKKIANYVLESPNHIIYGTMNDIKSEIHVGDATIIRFCQKLGFSGFSDLKIEIAKEDYSQKES
QAKDSELFFDEKERKIVNSLETTKRKLSIELLERSSALLSNASAIYIFGVGLSGNTAKDLEAMFLRIGIQAKAISDTHFQ
AQTAAILKNTDLVIGISLSGRTLDLYESLKIAKGHTAKILSITSNLVSPIAQLSDIVLQTTAEEFFDGGSLSGKISQLYI
CELLVRHHEKIFENEALKSREEIIRAVISKSID

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=238, Percent_Identity=32.3529411764706, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1788159, Length=251, Percent_Identity=25.4980079681275, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87082130, Length=253, Percent_Identity=28.0632411067194, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788767, Length=261, Percent_Identity=27.9693486590038, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30436; Mature: 30436

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEQVIEEKYKTLTKSEKKIANYVLESPNHIIYGTMNDIKSEIHVGDATIIRFCQKLGF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHCC
SGFSDLKIEIAKEDYSQKESQAKDSELFFDEKERKIVNSLETTKRKLSIELLERSSALLS
CCCCCCEEEEEHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NASAIYIFGVGLSGNTAKDLEAMFLRIGIQAKAISDTHFQAQTAAILKNTDLVIGISLSG
CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCEEEEEECCC
RTLDLYESLKIAKGHTAKILSITSNLVSPIAQLSDIVLQTTAEEFFDGGSLSGKISQLYI
CEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
CELLVRHHEKIFENEALKSREEIIRAVISKSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIEQVIEEKYKTLTKSEKKIANYVLESPNHIIYGTMNDIKSEIHVGDATIIRFCQKLGF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHCC
SGFSDLKIEIAKEDYSQKESQAKDSELFFDEKERKIVNSLETTKRKLSIELLERSSALLS
CCCCCCEEEEEHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NASAIYIFGVGLSGNTAKDLEAMFLRIGIQAKAISDTHFQAQTAAILKNTDLVIGISLSG
CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCEEEEEECCC
RTLDLYESLKIAKGHTAKILSITSNLVSPIAQLSDIVLQTTAEEFFDGGSLSGKISQLYI
CEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
CELLVRHHEKIFENEALKSREEIIRAVISKSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]